GWAS on Cataract and HDL in the PMRP

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Anthropometry (3)

Body_Mass_Index - Imputed BMI based on +/- 6 months time period (phv00073607.v1.p1)
height - Subject's height at enrollment (phv00073577.v1.p1)
weight - Subject's weight at enrollment (phv00073576.v1.p1)

Biomarkers (8)

Adjusted_HDL_Cholesterol_Measurement - Adjusted baseline HDL (age 59, BMI 29, no estrogen) (phv00073590.v1.p1)
Adjusted_LDL_Cholesterol_Measurement - Adjusted baseline LDL (age 59, BMI 29, no estrogen) (phv00073594.v1.p1)
Adjusted_Total_Cholesterol_Measurement - Adjusted baseline total cholesterol (age 59, BMI 29, no estrogen) (phv00073598.v1.p1)
Adjusted_Triglycerides - Adjusted baseline triglycerides (age 59, BMI 29, no estrogen) (phv00073602.v1.p1)
Median_HDL_Cholesterol_Measurement - Median baseline HDL cholesterol (no estrogen) (phv00073589.v1.p1)
Median_LDL_Cholesterol_Measurement - Median baseline LDL cholesterol (no estrogen) (phv00073593.v1.p1)
Median_Total_Cholesterol_Measurement - Median baseline total cholesterol (no estrogen) (phv00073597.v1.p1)
Median_Triglycerides - Median baseline triglycerides (no estrogen) (phv00073601.v1.p1)

Demographics (12)

Age_At_Enrollment - Age of participant at enrollment (phv00073573.v1.p1)
Age_Diabetes_Mellitus_Diagnosis - Age at the earliest indication of diabetes (phv00073575.v1.p1)
Age_First_Cancer - Age at first cancer indication (phv00073585.v1.p1)
Age_First_Cataract_Diagnosis - Age at first diagnosis of cataract (phv00073569.v1.p1)
Age_First_Cataract_Surgery - Age at first cataract surgery (phv00073570.v1.p1)
Age_First_Hypo_Hyperthyroidism - Age at first hypo- or hyperthyroidism indication? (phv00073583.v1.p1)
Age_First_Statin - Age at first statin use indication (phv00073581.v1.p1)
Age_First_Steroid - Age at first steroid use indication (phv00073579.v1.p1)
Age_Last_Eye_Exam - Age at most recent CPT recorded eye exam (phv00073571.v1.p1)
Age_Median_HDL_Cholesterol_Measurement - Median age at HDL results (phv00073587.v1.p1)
sex - Gender of participant (phv00071870.v1.p1)
SEX - Gender of participant (phv00077312.v1.p1)

Disease Events (4)

Cancer_Indicator - Any cancer (omitting minor skin cancer) (phv00073584.v1.p1)
case_control - Case or control? (phv00071869.v1.p1)
Diabetes_Mellitus - Diabetes status (phv00073574.v1.p1)
hypothyroidism_or_hyperthyroidism - Subject has hypo-or hyperthyroidism? (phv00073582.v1.p1)

Medications (2)

Statin_Use_IND-2 - Ever used statins? (phv00073580.v1.p1)
steroid_use - Suspicion of oral/adrenal steroid use? (phv00073578.v1.p1)

Race and Ethnicity (2)

ethnicity - Ethnicity of participant (phv00076432.v1.p1)
race - Race of partipant (phv00076431.v1.p1)

Substance Use (1)

Smoking_Status - Smoking status at enrollment (phv00073572.v1.p1)

Other (33)

AFFECTION_STATUS - Final affection status derived from electronic algorithm, but may have been superseded by the result of manual validation (if done). (phv00071875.v2.p1)
Age_Observation - Age when clinical event was recorded in record (phv00073608.v1.p1)
alcohol_use_past_month - During the past month, have you had at least one drink of any alcoholic beverage, such as beer, wine, wine coolers, or liquor? (phv00073586.v1.p1)
ANALYTE_TYPE - Analyte type used (phv00195871.v1.p1)
BMI_Median_HDL_Cholesterol_Measurement - Median BMI at HDL results (phv00073588.v1.p1)
CONSENT - Consent group as determined by DAC (phv00071872.v2.p1)
Counts_HDL_Cholesterol_Measurement - Number of baseline HDL results (no estrogen) (phv00073591.v1.p1)
Counts_LDL_Cholesterol_Measurement - Number of baseline LDL results (no estrogen) (phv00073595.v1.p1)
Counts_Total_Cholesterol_Measurement - Number of baseline total cholesterol results (no estrogen) (phv00073599.v1.p1)
Counts_Triglycerides - Number of baseline triglyceride results (no estrogen) (phv00073603.v1.p1)
decade_birth - Decade of birth (phv00073568.v1.p1)
FAMID - Family ID (phv00077308.v1.p1)
FATHER - Father's Subject ID (phv00077311.v1.p1)
MOTHER - Mother's Subject ID (phv00077310.v1.p1)
Relative_In_Cohort - Indicates if this individual is related to at least one other individual in the cohort. (phv00077307.v1.p1)
SAMP_SOURCE - Repository source of the sample (phv00071878.v1.p1)
SAMPID - Genetic Sample ID (phv00071877.v1.p1)
SAMPID - Sample ID (phv00195870.v1.p1)
SAMPLE_USE - Sample Use (phv00181341.v1.p1)
SOURCE_SAMPID - Sample ID used at the sample source (phv00071879.v1.p1)
SOURCE_SUBJID - Subject ID used at the subject source (phv00071874.v2.p1)
Standard_Error_HDL_Cholesterol_Measurement - Estimated standard error for baseline HDL (phv00073592.v1.p1)
Standard_Error_LDL_Cholesterol_Measurement - Estimated standard error for baseline LDL (phv00073596.v1.p1)
Standard_Error_Total_Cholesterol_Measurement - Estimated standard error for baseline total cholesterol (phv00073600.v1.p1)
Standard_Error_Triglycerides - Estimated standard error for baseline triglycerides (phv00073604.v1.p1)
SUBJ_SOURCE - Repository source of the subject (phv00071873.v2.p1)
SUBJID - Deidentified Subject/eMERGE ID (phv00071868.v1.p1)
SUBJID - Deidentified Subject/eMERGE ID (phv00077309.v1.p1)
SUBJID - Deidentified Subject/eMERGE ID (phv00071871.v2.p1)
SUBJID - Deidentified Subject/eMERGE ID (phv00071876.v1.p1)
SUBJID - Deidentified Subject/eMERGE ID (phv00073605.v1.p1)
TWINID - Identifier for each group of twins (phv00077313.v1.p1)
Validation_Status - Indicates if manual chart abstraction was performed, and how it compares to the electronic algorithm. (phv00088194.v1.p1)