Genome-Wide Association Study of HIV-1 Host Genetics Among Injection Drug Users

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Demographics (13)

age - Reported age of participant (phv00167742.v2.p2)
age_hiv - Age at HIV viral load measure (phv00481561.v1.p2)
amphet_age_ons - Age first used amphetamine (phv00481592.v1.p2)
coc_age_ons - Age first used cocaine (phv00481591.v1.p2)
gwassex - Genotype identified sex (phv00190888.v2.p2)
heroin_age_ons - Age first used heroin (phv00481567.v1.p2)
inj_age_ons - Age first injected drugs (phv00481583.v1.p2)
mj_age_ons - Age first used marijuana (phv00481594.v1.p2)
opioid_age_ons - Age first used opioids (phv00481568.v1.p2)
sed_age_ons - Age first used sedatives (phv00481593.v1.p2)
SEX - Sex (phv00492302.v1.p2)
sex_selfreport - Participant reported sex (phv00167740.v2.p2)
totopioid_age_ons - Age first used heroin or other opioids (phv00481569.v1.p2)

Disease Events (1)

hivstat - HIV status (phv00167737.v2.p2)

Race and Ethnicity (1)

ancestry_selfreport - Self-reported ancestry of participant (phv00167741.v2.p2)

Other (55)

amphet_ever - Ever used opioids (phv00481586.v1.p2)
amphet_ever_inj - Ever injected opioids (phv00481587.v1.p2)
amphet_inj_30d - Times injected amphetamine in past 30 days (phv00481598.v1.p2)
amphet_non_30d - Times used amphetamine, not injected, in past 30 days (phv00481599.v1.p2)
anal - Had receptive anal sex in the past 6 months, indicator used in LCA (phv00167749.v2.p2)
ANALYTE_TYPE - Analyte type (phv00190893.v2.p2)
BODY_SITE - Body site where sample was collected (phv00190892.v2.p2)
coc_ever - Ever used opioids (phv00481584.v1.p2)
coc_ever_inj - Ever injected opioids (phv00481585.v1.p2)
cocaine_inj_30d - Times injected cocaine in past 30 days (phv00481595.v1.p2)
cocaine_non_30d - Times used cocaine not injected in past 30 days (phv00481596.v1.p2)
CONSENT - Consent group as determined by DAC (phv00167728.v2.p2)
heroin_case - Used heroin 10+ times in the past 30 days (phv00481577.v1.p2)
heroin_ever - Ever used heroin (phv00481562.v1.p2)
heroin_ever_inj - Ever injected heroin (phv00481563.v1.p2)
heroin_inj_30d - Times injected heroin in past 30 days (phv00481570.v1.p2)
heroin_non_30d - Times used heroin not injected in past 30 days (phv00481571.v1.p2)
HISTOLOGICAL_TYPE - Cell or tissue type or subtype of sample (phv00190894.v2.p2)
inj_case - Injected drugs 10+ times in the past 30 days (phv00481582.v1.p2)
inj_ever - Ever injected drugs all participants are flagged yes (phv00481580.v1.p2)
inj_freq - Frequency of injection any drug in the past 30 days (phv00481581.v1.p2)
IS_TUMOR - Tumor status (phv00190895.v2.p2)
lca_group - Latent Class Analysis (LCA) assigned HIV risk group used in frequency matching (phv00167746.v2.p2)
mj_30d - Days used marijuana in past 30 days (phv00481601.v1.p2)
mj_case - Used marijuana 10+ days in the past 30 days (phv00481604.v1.p2)
mj_ever - Ever use marijuana (phv00481590.v1.p2)
mpartners - Multiple sex partners in the past year, indicator used in LCA (phv00167747.v2.p2)
needleshare - Sharing needles in the past 30 days, indicator used in LCA (phv00167750.v2.p2)
opioid_case - Used nonheroin opioid 10+ times in the past 30 days (phv00481578.v1.p2)
opioid_ever - Ever used opioids (phv00481564.v1.p2)
opioid_ever_inj - Ever injected opioids (phv00481565.v1.p2)
opioid_inj_30d - Times injected opioid other than heroin in past 30 days (phv00481572.v1.p2)
opioid_non_30d - Times used opioid other than heroin, not injected, in past 30 days (phv00481573.v1.p2)
SAMPLE_ID - De-identified sample ID (phv00190891.v2.p2)
SAMPLE_ID - Sample ID (phv00167731.v2.p2)
sed_ever - Ever used sedatives (phv00481588.v1.p2)
sed_ever_inj - Ever injected sedatives (phv00481589.v1.p2)
sexwork - Participant ever traded sex for drugs or money, indicator used in LCA (phv00167751.v2.p2)
site - Blinded site indicator site 1 vs. 2 (phv00167752.v2.p2)
stis - Ever had sexually transmitted disease (excluding HIV), indicator used in LCA (phv00167748.v2.p2)
SUBJECT_ID - Subject ID (phv00167734.v2.p2)
SUBJECT_ID - Subject ID (phv00167727.v2.p2)
SUBJECT_ID - Subject ID (phv00167730.v2.p2)
surveyyear - Year participated in UHS (1986-2002) (phv00167744.v2.p2)
totamphet_30d - Times used amphetamine, any route, in past 30 days (phv00481600.v1.p2)
totamphet_case - Used amphetamine 10+ times in the past 30 days (phv00481603.v1.p2)
totcoc_30d - Times used cocaine, any route, in past 30 days (phv00481597.v1.p2)
totcoc_case - Used any cocaine 10+ times in past 30 days (phv00481602.v1.p2)
totopioid_case - Used any opioid 10+ times in past 30 days (phv00481579.v1.p2)
totopioid_ever - Ever used heroin or other opioids (phv00481566.v1.p2)
totopioid_inj_30d - Times injected any opioid in past 30 days (phv00481574.v1.p2)
totopioid_non_30d - Times used any opioid, not injected, in past 30 days (phv00481575.v1.p2)
totopioid_tot_30d - Times used any opioid, any route, in past 30 days (phv00481576.v1.p2)
viralload_cperml - Viral Load copies/mL (phv00167738.v2.p2)
viralload_log10 - Viral load log 10 (phv00167739.v2.p2)