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The Finland-United States Investigation of NIDDM Genetics (FUSION) Tissue Biopsy Study

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Anthropometry (6)

Biomarkers (20)

Demographics (3)

Substance Use (2)

Other (57)

  • ANALYTE_TYPE - Analyte Type (phv00405127.v2.p1)
  • area_code - Sample collection site (phv00405123.v2.p1)
  • BARCODE - For single-nucleus data, cellular barcode (phv00544240.v1.p1)
  • BATCH - RNA extraction and library creation batch; sequencing pool (phv00405130.v2.p1)
  • BODY_SITE - Body site where sample was collected (phv00405126.v2.p1)
  • CONSENT - Consent group as determined by DAC (phv00265723.v3.p1)
  • daily_energy_expenditure - Total energy expenditure of all physical activities from 24h record: intensity of physical activity in metabolic equivalents (METs)*duration (hrs/day)*weight (kg) (phv00570712.v1.p1)
  • FRACTION_MITOCHONDRIAL - For single-nucleus data, the fraction of total reads from the droplet that map to the mitochondrial genome (phv00544243.v1.p1)
  • fS_C_pept - Fasting serum C-peptide (phv00570714.v1.p1)
  • fS_C_pept_30 - 30 min serum C-peptide (phv00570715.v1.p1)
  • FUSION_USE - Fusion use (phv00405135.v2.p1)
  • GENOTYPING_CENTER - Name of the center which conducted genotyping (phv00405132.v2.p1)
  • HISTOLOGICAL_TYPE - Cell or tissue type or subtype of sample (phv00405129.v2.p1)
  • HQAA_UMI - For single-nucleus ATAC data - high quality autosomal alignments (HQAA); for single-nucleus RNA data - unique molecular identifiers (UMIs) (phv00544242.v1.p1)
  • IS_TUMOR - Tumor status (phv00405128.v2.p1)
  • LIBRARY - For single-nucleus data, sequencing library for the nucleus (phv00544237.v1.p1)
  • LTPA_duration_all - Total duration of all leisure time physical activities (from 12mo record) (phv00570725.v1.p1)
  • LTPA_duration_cond - Total duration of all conditioning leisure time physical activities (from 12mo record) (phv00570726.v1.p1)
  • LTPA_duration_noncond - Total duration of all non-conditioning leisure time physical activities (from 12mo record) (phv00570727.v1.p1)
  • LTPA_energy_all - Total energy expenditure of all leisure time physical activities (from 12mo record) (phv00570728.v1.p1)
  • LTPA_energy_cond - Total energy expenditure of all conditioning leisure time physical activities (from 12mo record) (phv00570729.v1.p1)
  • LTPA_energy_light - Total energy expenditure of all light leisure time physical activity (<4.0 METs) (from 12mo record) (phv00570730.v1.p1)
  • LTPA_energy_moderate - Total energy expenditure of all moderate leisure time physical activity (4.0-5.9 METs) (from 12mo record) (phv00570731.v1.p1)
  • LTPA_energy_modvig - Total energy expenditure of all moderate and vigorous leisure time physical activity (>=4.0 METs) (from 12mo record) (phv00570732.v1.p1)
  • LTPA_energy_noncond - Total energy expenditure of all non-conditioning leisure time physical activities (from 12mo record) (phv00570733.v1.p1)
  • LTPA_energy_vigorous - Total energy expenditure of all vigorous leisure time physical activity (>=6.0 METs) (from 12mo record) (phv00570734.v1.p1)
  • MASS - Starting mass of sample used (phv00405134.v2.p1)
  • moderate_physical_activity - Moderate physical activity (number of hours with codes 5-8 from 24h record) (phv00570735.v1.p1)
  • ogtt_status - Glucose tolerance from OGTT (WHO 1999 criteria) (phv00265735.v2.p1)
  • p_insu_120 - 2 hr plasma insulin from OGTT (phv00570739.v1.p1)
  • p_insu_30 - 30 min plasma insulin from OGTT (phv00570737.v1.p1)
  • p_insu_60 - 60 min plasma insulin from OGTT (phv00570738.v1.p1)
  • POOLED_SUBJECT_ID - ID after pooling subjects (phv00544236.v1.p1)
  • REASON - Reason not used for analysis (phv00405137.v2.p1)
  • RFM - Relative fat mass (Woolcott & Bergman 2018, PMID: 30030479) (phv00570740.v1.p1)
  • RIN - RNA Integrity Number (phv00405131.v2.p1)
  • S_Insu_30 - 30 min serum insulin (phv00570744.v1.p1)
  • SAMPLE_ID - De-identified Sample ID (phv00405125.v2.p1)
  • SAMPLE_ID - Sample ID (phv00265729.v3.p1)
  • SEQUENCING_CENTER - Name of the center which conducted sequencing (phv00405133.v2.p1)
  • sleep_24h - Sleeping or lying down resting (number of hours with code 1 from 24h record) (phv00570749.v1.p1)
  • sleep_biopsy - Sleeping (from 12mo record, for month of biopsy) (phv00570750.v1.p1)
  • SNG.1ST - For single-nucleus data, the subject labelcode to which the nucleus was estimated to be derived from using Demuxlet. The corresponding labelcode/SAMPLE_ID can be matched in the vcf file (phv00544241.v1.p1)
  • SOURCE_SUBJECT_ID - Subject ID used in the Source Repository (phv00265725.v3.p1)
  • SOURCE_SUBJECT_ID2 - Subject ID used in the Additional Repository (phv00265727.v3.p1)
  • strenuous_physical_activity - Strenuous physical activity (number of hours with codes 6-8 from 24h record) (phv00570752.v1.p1)
  • SUBJECT_ID - Subject ID (phv00265732.v2.p1)
  • SUBJECT_ID - Subject ID (phv00265722.v3.p1)
  • SUBJECT_ID - Subject ID (phv00265728.v3.p1)
  • SUBJECT_SOURCE - Source repository where subjects originate (phv00265724.v3.p1)
  • SUBJECT_SOURCE2 - Additional repository where subjects are included (phv00265726.v3.p1)
  • total_daily_physical_activity - Total daily physical activity (number of hours with codes 3-9 from 24h record) (phv00570753.v1.p1)
  • totalcw - Total alcohol consumption (phv00570754.v1.p1)
  • TSS_ENRICHMENT - For single-nucleus ATAC data the enrichment of reads at the transcription start sites (TSS) (phv00544244.v1.p1)
  • UMAP_1 - For single-nucleus data, first UMAP coordinate after joint processing and dimension reduction (phv00544238.v1.p1)
  • UMAP_2 - For single-nucleus data, second UMAP coordinate after joint processing and dimension reduction (phv00544239.v1.p1)
  • USE_ME - Used for analysis or not (phv00405136.v2.p1)