ASsessing and Predicting Infant RSV Effects and Severity (AsPIRES) Study

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Anthropometry (1)

birth_weight - Subject's weight at birth (phv00356082.v2.p1)

Demographics (4)

age_enrollment - Subject's age at time of enrollment (phv00394891.v1.p1)
SampleDaysSinceOnset - Days since RSV onset at time of sample collection (phv00394895.v1.p1)
sex - Gender of participant (phv00394888.v1.p1)
VisitAge - Subject age at time of visit (phv00394872.v1.p1)

Disease Events (15)

ANY_BACTERIA - H. influenzae, M. catarrhalis or S. pneumoniae detected (phv00356088.v1.p1)
ANY_PATHOGEN - Any bacteria or virus detected (phv00356089.v1.p1)
ANY_VIRUS - Coronavirus or Rhinovirus detected (phv00356090.v1.p1)
Coronavirus - Coronavirus detected (phv00356091.v1.p1)
H_influenzae - H. influenzae detected (phv00356092.v1.p1)
M_catarrhalis - M. catarrhalis detected (phv00356093.v1.p1)
phys_find_apnea - Presence of apnea (phv00394878.v1.p1)
phys_find_cyanosis - Presence of cyanosis (phv00394877.v1.p1)
phys_find_lethargy - Presence of lethargy (phv00394879.v1.p1)
phys_find_poor_air_movement - Presence of poor air movement (phv00394880.v1.p1)
phys_find_rales - Presence of rales (phv00394875.v1.p1)
phys_find_retractions - Presence of retractions (phv00394876.v1.p1)
phys_find_wheezing - Presence of wheezing (phv00394874.v1.p1)
Rhinovirus - Rhinovirus detected (phv00356094.v1.p1)
S_pneumoniae - S. pneumoniae dectected (phv00356095.v1.p1)

General Health (1)

lengthOfStay - Length of stay (phv00394883.v1.p1)

Race and Ethnicity (2)

Ethnicity - Subject ethnicity (phv00394890.v1.p1)
race - Race of participant (phv00394889.v1.p1)

Reproductive Health (4)

breastfed - Any breastfeeding (phv00356084.v2.p1)
breastfeed_summary_score - Derived score for breastfeeding. Summed and divided by the number of months that the subject had data. (phv00394892.v1.p1)
delivery_method - Delivery method (phv00356080.v2.p1)
gestational_age - Subject's gestational age (phv00356081.v2.p1)

Sleep (1)

worst_saO2 - Worst saturated oxygen score (phv00394882.v1.p1)

Other (105)

Adeno - Presence of Adenovirus within the sample (phv00394896.v1.p1)
Adeno classification - Hardcoded to virus, needed for analysis (phv00394897.v1.p1)
ANALYTE_TYPE - Analyte Type (phv00356118.v2.p1)
Antibiotic Use LE v11 - Antibiotic taken at visit 11 or a few days before v11 sample (phv00417512.v1.p1)
Antibiotic Use LE v13 - Antibiotic taken at visit 11 or a few days before v11 sample or after v11 but before v13 sample (phv00417513.v1.p1)
Attribute - Sample use if not indicated in 5a (phv00394893.v1.p1)
B. pert - Presence of Bordetella pertussis within the sample (phv00394900.v1.p1)
B. pert classification - Hardcoded to bacteria needed for analysis (phv00394901.v1.p1)
B1 - Taxon: k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__ (phv00356097.v1.p1)
B10 - Taxon: k__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus (phv00356106.v1.p1)
B11 - Taxon: k__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus (phv00356107.v1.p1)
B12 - Taxon: k__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae (phv00356108.v1.p1)
B13 - Taxon: k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae;g__Haemophilus;s__influenzae (phv00356109.v1.p1)
B14 - Taxon: k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae;g__ (phv00356110.v1.p1)
B15 - Taxon: k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae;g__Actinobacillus (phv00356111.v1.p1)
B16 - Taxon: k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae;g__Aggregatibacter (phv00356112.v1.p1)
B17 - Taxon: k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae;g__Haemophilus (phv00356113.v1.p1)
B18 - Taxon: k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae;g__Pasteurella (phv00356114.v1.p1)
B19 - Taxon: k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae (phv00356115.v1.p1)
B2 - Taxon: k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter (phv00356098.v1.p1)
B3 - Taxon: k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Alkanindiges (phv00356099.v1.p1)
B4 - Taxon: k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Enhydrobacter (phv00356100.v1.p1)
B5 - Taxon: k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Moraxella (phv00356101.v1.p1)
B6 - Taxon: k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Perlucidibaca (phv00356102.v1.p1)
B7 - Taxon: k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Psychrobacter (phv00356103.v1.p1)
B8 - Taxon: k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae (phv00356104.v1.p1)
B9 - Taxon: k__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__ (phv00356105.v1.p1)
Boca - Presence of Bocavirus within the sample (phv00394898.v1.p1)
Boca classification - Hardcoded to virus, needed for analysis (phv00394899.v1.p1)
BODY_SITE - Body site where sample was collected (phv00356117.v2.p1)
C. pneu - Presence of Chlamydophila pneumoniae within the sample (phv00394910.v1.p1)
C. pneu classification - Hardcoded to bacteria needed for analysis (phv00394911.v1.p1)
CONSENT - Consent group as determined by DAC (phv00356070.v2.p1)
Corona 1 - Presence of Coronavirus 1 within the sample (phv00394902.v1.p1)
Corona 1 classification - Hardcoded to virus, needed for analysis (phv00394903.v1.p1)
Corona 2 - Presence of Coronavirus 2 within the sample (phv00394904.v1.p1)
Corona 2 classification - Hardcoded to virus, needed for analysis (phv00394905.v1.p1)
Corona 3 - Presence of Coronavirus 3 within the sample (phv00394906.v1.p1)
Corona 3 classification - Hardcoded to virus, needed for analysis (phv00394907.v1.p1)
Corona 4 - Presence of Coronavirus 4 within the sample (phv00394908.v1.p1)
Corona 4 classification - Hardcoded to virus, needed for analysis (phv00394909.v1.p1)
Corrected RSV Severity - RSV severity label (phv00394886.v1.p1)
EnrollmentSeason - Year of study of enrollment (phv00394887.v1.p1)
Entero XL - Presence of Enterobacteriaceae within the sample (phv00394912.v1.p1)
Entero XL classification - Hardcoded to bacteria needed for analysis (phv00394913.v1.p1)
Fa Imputed Titer - Fa serum antibody titer score (phv00394944.v1.p1)
family_size - Number of adults and other children in home (phv00356085.v2.p1)
Flu A - Presence of Flu A within the sample (phv00394914.v1.p1)
Flu A classification - Hardcoded to virus, needed for analysis (phv00394915.v1.p1)
Flu B - Presence of Flu B within the sample (phv00394916.v1.p1)
Flu B classification - Hardcoded to virus, needed for analysis (phv00394917.v1.p1)
Ga Imputed Titer - Ga serum antibody titer score (phv00394945.v1.p1)
Gb Imputed Titer - Gb serum antibody titer score (phv00394946.v1.p1)
GENE - Gene being expressed (phv00356077.v1.p1)
H. influ - Presence of Haemophilus influenzae within the sample (phv00394918.v1.p1)
H. influ classification - Hardcoded to bacteria needed for analysis (phv00394919.v1.p1)
HISTOLOGICAL_TYPE - Cell or tissue type or subtype of sample (phv00356120.v2.p1)
hMPV - Presence of Human metapneumovirus within the sample (phv00394920.v1.p1)
hMPV classification - Hardcoded to virus, needed for analysis (phv00394921.v1.p1)
IS_TUMOR - Tumor status (phv00356119.v2.p1)
M. cat - Presence of Moraxella catarrhalis within the sample (phv00394922.v1.p1)
M. cat classification - Hardcoded to bacteria needed for analysis (phv00394923.v1.p1)
M. hom - Presence of Mycoplasma hominis within the sample (phv00394924.v1.p1)
M. hom classification - Hardcoded to bacteria needed for analysis (phv00394925.v1.p1)
M. pneu - Presence of Mycoplasma pneumoniae within the sample (phv00394926.v1.p1)
M. pneu classification - Hardcoded to bacteria needed for analysis (phv00394927.v1.p1)
max_resp_rate - Maximum respiratory rate (phv00394881.v1.p1)
Nasal Swab Titer - Nasal swab antibody titer score (phv00394949.v1.p1)
Nasal Wash Titer - Nasal wash antibody titer score (phv00394950.v1.p1)
Parecho - Presence of parechovirus within the sample (phv00394928.v1.p1)
Parecho classification - Hardcoded to virus, needed for analysis (phv00394929.v1.p1)
phys_find_appearance - Physician finding - general appearance (phv00394873.v1.p1)
PIV 1 - Presence of PIV 1 within the sample (phv00394930.v1.p1)
PIV 1 classification - Hardcoded to virus, needed for analysis (phv00394931.v1.p1)
PIV 2 - Presence of PIV 2 within the sample (phv00394932.v1.p1)
PIV 2 classification - Hardcoded to virus, needed for analysis (phv00394933.v1.p1)
PIV 3 - Presence of PIV 3 within the sample (phv00394934.v1.p1)
PIV 3 classification - Hardcoded to virus, needed for analysis (phv00394935.v1.p1)
Publication - PMID's of publications this sample is used in, seperated by semi colons (phv00356121.v2.p1)
RAW - Score tied to gene expression within a sample. The lower the score, the higher expression within that sample (phv00356078.v1.p1)
ReadCount - Number of reads within the sample (phv00405923.v1.p1)
Rhino - Presence of Rhinovirus within the sample (phv00394936.v1.p1)
Rhino classification - Hardcoded to bacteria needed for analysis (phv00394937.v1.p1)
RSV - Presence of RSV within the sample (phv00394938.v1.p1)
RSV A Neut Antibody Titer - RSV A serum antibody titer score (phv00394947.v1.p1)
RSV B Neut Antibody Titer - RSV B serum antibody titer score (phv00394948.v1.p1)
RSV classification - Hardcoded to virus, needed for analysis (phv00394939.v1.p1)
rsv_strain - Strain of RSV (phv00394884.v1.p1)
RsvStatus - RSV status at time of sample (phv00412786.v1.p1)
S. pneu - Presence of Streptococcus pneumoniae within the sample (phv00394940.v1.p1)
S. pneu classification - Hardcoded to virus, needed for analysis (phv00394941.v1.p1)
SAMPLE_ID - De-identified Sample ID (phv00356116.v2.p1)
SAMPLE_ID - De-identified Sample ID (phv00356096.v1.p1)
SAMPLE_ID - Sample ID (phv00356074.v2.p1)
SequenceNum - Number mapping to corresponding visit (phv00394894.v1.p1)
severity_score - Derived RSV severity score (phv00394885.v1.p1)
smoke_exposure - Tabacco smoke exposure (phv00356086.v2.p1)
SUBJECT_ID - De-identified Subject ID (phv00394871.v1.p1)
SUBJECT_ID - De-identified Subject ID (phv00356079.v2.p1)
SUBJECT_ID - De-identified Subject ID (phv00356087.v1.p1)
SUBJECT_ID - De-identified Subject ID (phv00356076.v1.p1)
SUBJECT_ID - Subject ID (phv00356069.v2.p1)
SUBJECT_ID - Subject ID (phv00356073.v2.p1)
Urea - Presence of Ureaplasma within the sample (phv00394942.v1.p1)
Urea classification - Hardcoded to bacteria needed for analysis (phv00394943.v1.p1)