Disease Events (34)
- Body Site - PRIMARY_TISSUE_TYPE, Primary Organ (phv00394620.v1.p1)
- CANCER_TYPE - Primary Organ (phv00394581.v1.p1)
- CONTENT_PERCENTAGE - Percentage of tumor content of material sent to tissue bank (phv00394654.v1.p1)
- GRADE - Histologic Grade (WHO Grading System) ; Two-Tier Grading System Grade;Histologic Grade (Fuhrman Nuclear Grading System); AJCC 7th Edition Histologic Grade (phv00394690.v1.p1)
- GRADE_PRC - Histologic Grade (WHO Grading System); Two-Tier Grading System Grade;Histologic Grade (Fuhrman Nuclear Grading System); AJCC 7th Edition Histologic Grade (phv00394717.v1.p1)
- GRADING_SYSTEM - What histologic grading system was applied (phv00394689.v1.p1)
- GRADING_SYSTEM_PRC - What histologic grading system was applied (phv00394716.v1.p1)
- HISTO_ELIGIBLE - Did pathology review of the H and E slide derived from QC FFPE tumor tissue confirm the histological type to be eligible for BPV study (phv00394695.v1.p1)
- HISTO_ELIGIBLE_PRC - Did pathology review of the H and E slide derived from QC FFPE tumor tissue confirm the histological type to be eligible for BPV study (phv00394718.v1.p1)
- HISTOLOGIC_TYPE_PRC - Histologic type (phv00394702.v1.p1)
- Histological Type - Histologic type (phv00394621.v1.p1)
- IS_TUMOR - Tumor status of sample (phv00394622.v1.p1)
- ORGAN_ORIGIN_PRC - Organ of origin (phv00394701.v1.p1)
- OTHER_HISTOLOGIC_TYPE - Specify type (phv00394675.v1.p1)
- OTHER_HISTOLOGIC_TYPE_PRC - Specify type: (phv00394703.v1.p1)
- PATH_METASTASES - CM: Pathologic Spread Distant Metastases (AJCC 7th Edition) (phv00394693.v1.p1)
- PATH_NODES - PN: Pathologic Spread Lymph Nodes (AJCC 7th Edition) (phv00394692.v1.p1)
- PATH_STAGE - Pathologic Tumor Stage Grouping (FIGO) (phv00394694.v1.p1)
- PATH_TUMOR - PT: Pathologic Spread Primary Tumor (AJCC 7th Edition) (phv00394691.v1.p1)
- PCT_NECROTIC_TISSUE - Percent of cross-sectional surface area of entire slide composed of necrotic tissue (phv00394682.v1.p1)
- PCT_NECROTIC_TISSUE_PRC - Percent of cross-sectional surface area of entire slide composed of necrotic tissue (phv00394710.v1.p1)
- PCT_NECROTIC_TUMOR - Percent Necrotic Tumor by surface area (phv00394684.v1.p1)
- PCT_NECROTIC_TUMOR_PRC - Percent Necrotic Tumor by surface area (phv00394712.v1.p1)
- PCT_NON_CELLULAR - Percent Non-Cellular Component by surface area (i.e., mucin, hemorrhage, blood clot, etc.) (phv00394686.v1.p1)
- PCT_NON_CELLULAR_PRC - Percent Non-Cellular Component by surface area (i.e., mucin, hemorrhage, blood clot, etc.) (phv00394714.v1.p1)
- PCT_TUMOR_AREA - Percent of cross-sectional surface area of entire slide composed of tumor focus (includes necrotic tumor) (phv00394680.v1.p1)
- PCT_TUMOR_AREA_PRC - Percent of cross-sectional surface area of entire slide composed of tumor focus (Includes necrotic tumor) (phv00394708.v1.p1)
- PCT_TUMOR_CELLULARITY - Percent of tumor nuclei by cell count of the entire slide (number of tumor epithelial cell nuclei as compared to all cell nuclei) (phv00394681.v1.p1)
- PCT_TUMOR_CELLULARITY_PRC - Percent of tumor nuclei by cell count of the entire slide (number of tumor epithelial cell nuclei as compared to all cell nuclei): (phv00394709.v1.p1)
- PCT_VIABL_TUMOR - Percent Viable Tumor by surface area (not including stroma) (phv00394683.v1.p1)
- PCT_VIABL_TUMOR_PRC - Percent Viable Tumor by surface area (not including stroma) (phv00394711.v1.p1)
- PCT_VIABLE_NON_TUMOR - Percent Tumor Stroma by surface area (phv00394685.v1.p1)
- PCT_VIABLE_NON_TUMOR_PRC - Percent Tumor Stroma by surface area (phv00394713.v1.p1)
- PERC_TUMOR - Percent tumor nuclei (phv00394725.v1.p1)
Other (122)
- ACTUAL_TIME_IN_FIXATIVE - Actual Time in Fixative (phv00394631.v1.p1)
- Aliquot ID - Aliquot ID (phv00394726.v1.p1)
- Analyte Type - Analyte type (phv00394734.v1.p1)
- APPEARANCE - Gross appearance of material sent to tissue bank (phv00394655.v1.p1)
- AREA_PERCENTAGE - Percentage of gross area of necrosis of material sent to tissue bank (phv00394653.v1.p1)
- BAR_CODE - DNA PAXgene tube Specimen barcode ID or RNA PAXgene tube Specimen barcode ID or EDTA collection tube Specimen barcode ID or Serum Separator Tube barcode (phv00394598.v1.p1)
- BLOOD_DRAW - Blood Collection Tube Details (phv00394582.v1.p1)
- BLOOD_DRAW_TYPE - Blood draw type (phv00394612.v1.p1)
- BLOOD_DRAW_TYPE_OS - Specify Other Blood Draw Type (phv00394613.v1.p1)
- BLOOD_FORM_VERSION - BLOOD_FORM_VERSION (phv00394608.v1.p1)
- BLOOD_FROZEN - Time Placed on Dry Ice (phv00394587.v1.p1)
- BLOOD_MINIMUM - The minimum requirement was met for pre-operative blood collection as per the SOP (phv00394610.v1.p1)
- BLOOD_RECEIPT_HUMIDITY - Humidity in lab when tube(s) received or Humidity in lab when tube(s) from second blood draw received (phv00394619.v1.p1)
- BLOOD_RECEIPT_TEMP - Temperature in lab when blood was received or Temperature in lab when blood from second draw was received (phv00394618.v1.p1)
- BLOOD_SOURCE - Blood source (phv00394615.v1.p1)
- BLOOD_SOURCE_OS - Specify Other Blood Source (phv00394616.v1.p1)
- BLOOD_STORAGE - Time Transferred to Freezer (phv00394588.v1.p1)
- column_headers - Column_headers (phv00394733.v1.p1)
- CONSISTENT_LOCAL_PRC - This slide is consistent with the findings of the Diagnostic Pathology Report for this case; This slide is consistent with the findings of the local BSS pathologist (phv00394698.v1.p1)
- CONSISTENT_LOCAL_PRC.1 - CONSISTENT_LOCAL_PRC.1 (phv00394721.v1.p1)
- CONTAINER - Specimen Tube Type (phv00394584.v1.p1)
- DATE_SAMPLE_FROZEN - Date/Time the tissue sample was frozen in liquid nitrogen (phv00394625.v1.p1)
- DATE_TIME_BLOOD_RECEIVED - Date and time blood received in lab or Date and time second blood draw was received in lab (phv00394617.v1.p1)
- DELAY_TO_FIXATION_TIME - Delay to Fixation Time (phv00394630.v1.p1)
- DETAIL - Specify types and % (phv00394676.v1.p1)
- DETAIL_PRC - Specify types and % (phv00394704.v1.p1)
- DIAGNOSIS - Gross diagnosis of resected tissue (phv00394642.v1.p1)
- DIMEN_MEET_CRITERIA - Do the dimensions of each experimental piece meet the criteria specified within the BPV Surgical Tissue Collection and Preservation Procedure (phv00394669.v1.p1)
- DISEASE_OBSERVED - Gross appearance of disease was observed in resected tissue (phv00394641.v1.p1)
- EXCESS_RELEASED - Tumor tissue was released to the tissue bank (phv00394643.v1.p1)
- EXCESSD - Dimensions of tissue (phv00394646.v1.p1)
- EXCESSH - Dimensions of tissue (phv00394644.v1.p1)
- EXCESSW - Dimensions of tissue (phv00394645.v1.p1)
- FREEZER_TYPE - Freezer Type Transferred to (phv00394589.v1.p1)
- FT_ADDL_TUMOR - Allocated for processing as (phv00394652.v1.p1)
- FTM1 - Allocated for processing as (phv00394647.v1.p1)
- FTM2 - Allocated for processing as (phv00394648.v1.p1)
- FTM3 - Allocated for processing as (phv00394649.v1.p1)
- FTM4 - Allocated for processing as (phv00394650.v1.p1)
- FTM5 - Allocated for processing as (phv00394651.v1.p1)
- GP_CONTAINER - Specimen Tube Type (phv00394595.v1.p1)
- GP_PROCESSED_FOR - Processed for (phv00394596.v1.p1)
- GP_SPECIMEN_ID - Collection Tube Specimen Barcode ID (phv00394594.v1.p1)
- GP_VOLUME - Volume Collected (phv00394597.v1.p1)
- limsid_rawarea - Limsid_rawarea (phv00394580.v1.p1)
- MEETS_CRITERIA - This slide meets the microscopic analysis criteria of the BPV project of necrosis percentage of less than 20% and tumor content equal to 50% tumor cells by surface area (phv00394696.v1.p1)
- MEETS_CRITERIA_PRC - This slide meets the microscopic analysis criteria of the BPV project of necrosis percentage of less than 20% and tumor content of equal to 50% tumor nuclei (phv00394719.v1.p1)
- MEETS_CRITERIA_SAMPLE - This slide meets the microscopic analysis criteria for the BPV project of less than 20% necrosis and tumor content of equal to 50% tumor nuclei (phv00394724.v1.p1)
- METHOD_OF_FREEZING - Method of Freezing (phv00394626.v1.p1)
- MODULE - MODULE (phv00394623.v1.p1)
- NON_CELLULAR_DESC - If present, describe Non-Cellular component (phv00394687.v1.p1)
- Normal tissue? - Normal tissue? (phv00394732.v1.p1)
- NORMAL_ADJ_RELEASED - Normal adjacent tissue was released to the tissue bank in addition to tumor tissue? (phv00394670.v1.p1)
- NORMAL_ADJD - Dimensions of tissue (phv00394673.v1.p1)
- NORMAL_ADJH - Dimensions of tissue (phv00394671.v1.p1)
- NORMAL_ADJW - Dimensions of tissue (phv00394672.v1.p1)
- P_CONTAINER - Specimen Tube Type (phv00394591.v1.p1)
- P_PROCESSED_FOR - Processed for (phv00394592.v1.p1)
- P_SPECIMEN_ID - Conical centrifuge tube code or Collection Tube Specimen Barcode ID (phv00394590.v1.p1)
- P_VOLUME - Conical tube volume or Specimen Tube Type (phv00394593.v1.p1)
- PERMISSION_TO_PROCEED - Did you get permission from Leidos Biomed to proceed with collection (phv00394611.v1.p1)
- PLASMA_HEMOLYSIS - Was presence of Gross Hemolysis of Plasma observed (phv00394606.v1.p1)
- PLASMA_REMAINING_VOL - Volume of the Whole Cell Pellet remaining after plasma removed (phv00394607.v1.p1)
- position - Position (phv00394729.v1.p1)
- PROC_COMMENTS - DNA PAXgene tube collection comments or RNA PAXgene tube collection comments or Plasma processing comments or Serum processing comments or Whole Cell Pellet processing comments (phv00394604.v1.p1)
- PROC_END - Time Plasma aliquot processing was completed or Time Serum aliquot processing was completed or Time Whole Cell Pellet Aliquots processing was completed (phv00394600.v1.p1)
- PROC_FROZEN - Time DNA PAXgene tube was frozen at -20 degree of centigrade plus or minus 2 C or Time RNA PAXgene tube was frozen at -20 degree of centigrade pluse or minuse 2C or Time Plasma aliquots were frozen or Time Serum aliquots were frozen or Time Whole Cell Pellet Aliquots were frozen (-80C) (phv00394601.v1.p1)
- PROC_SOP_DEV - DNA PAXgene tube was collected and stored in accordance with the specified SOP or RNA PAXgene tube was collected and stored in accordance with the specified SOP or Plasma processing was performed in accordance with specified SOP or Serum processing was performed in accordance with the specified SOP or Whole Cell Pellet processing was performed in accordance with the specified SOP (phv00394603.v1.p1)
- PROC_START - Time Plasma processing began or Time Serum processing began (phv00394599.v1.p1)
- PROC_STORAGE - Time DNA PAXgene tube was transferred to storage at -75 degree of centigrade plus or minus 5 C or Time RNA PAXgene tube was transferred to storage at -75 degree of centigrade plus or minus 5 C or Time Plasma aliquots were transferred to storage or Time Serum aliquots were transferred to storage or Time Whole Cell Pellet Aliquots were transferred to storage (phv00394602.v1.p1)
- PROCESSED_FOR - Processed for (phv00394585.v1.p1)
- PROTOCOL - Experimental Protocol A-D AND QC FFPE (Middle Left) Section (phv00394624.v1.p1)
- Protocol: - Protocol: (phv00394730.v1.p1)
- RANDOMIZATION_KEY - Randomization Key (phv00394614.v1.p1)
- REASON_NOT_CONS - Specify findings (phv00394699.v1.p1)
- REASON_NOT_CONS_PRC - Specify findings (phv00394722.v1.p1)
- REASON_NOT_MEET - Specify findings (phv00394697.v1.p1)
- REASON_NOT_MEET_PRC - Specify findings (phv00394720.v1.p1)
- RESECTION_WEIGHT - Weight of resection (phv00394640.v1.p1)
- RESECTIOND - Dimensions of resection (phv00394639.v1.p1)
- RESECTIONH - Dimensions of resection (phv00394637.v1.p1)
- RESECTIONW - Dimensions of resection (phv00394638.v1.p1)
- ROOM_HUMIDITY - Humidity of pathology gross room when specimen arrived from OR (phv00394636.v1.p1)
- ROOM_TEMPERATURE - Temperature of pathology gross room when specimen arrived from OR (phv00394635.v1.p1)
- SAME_ORIGIN_TYPE - Organ of origin and histologic type are the same as the QC section (phv00394723.v1.p1)
- Sample Description - Sample Description (disease, control, time point, etc.) (phv00394728.v1.p1)
- Sample type - Sample type (serum, plasma, cells, control article, etc.) (phv00394727.v1.p1)
- SAMPLE_ID - Specimen ID, Collection Tube Specimen Barcode ID or or Specimen barcode ID (phv00394579.v1.p1)
- SAMPLE_TYPE - SAMPLE_TYPE (phv00394583.v1.p1)
- SARCOMATOID - Presence of Sarcomatoid features (phv00394677.v1.p1)
- SARCOMATOID_DESC - Describe Sarcomatoid features (phv00394678.v1.p1)
- SARCOMATOID_DESC_PRC - Describe Sarcomatoid features (phv00394706.v1.p1)
- SARCOMATOID_PRC - Presence of Sarcomatoid features (phv00394705.v1.p1)
- SEC_TISD - Dimensions of second piece of tumor tissue (if applicable) (phv00394659.v1.p1)
- SEC_TISH - Dimensions of second piece of tumor tissue (if applicable) (phv00394657.v1.p1)
- SEC_TISSUE_COLLECT - Was a second piece of tumor tissue collected (phv00394656.v1.p1)
- SEC_TISW - Dimensions of second piece of tumor tissue (if applicable) (phv00394658.v1.p1)
- SLIDE_MODULE - Slide ID examined by pathologist (phv00394674.v1.p1)
- SLIDE_MODULE_PRC - Slide ID examined by pathologist (phv00394700.v1.p1)
- SOP - Blood Collection and Processing SOP; BPV SOP governing transport of tissue from OR to pathology gross room (phv00394609.v1.p1)
- ST_ADDL_TUMOR - Allocated for processing as (phv00394665.v1.p1)
- ST_APPEARANCE - Gross appearance of second piece of tumor tissue sent to tissue bank (if applicable) (phv00394668.v1.p1)
- ST_AREA_PERCENTAGE - Percentage of gross area of necrosis of second piece of tumor tissue sent to tissue bank (if applicable) (phv00394666.v1.p1)
- ST_CONTENT_PERCENTAGE - Percentage of tumor content of second piece of tumor tissue sent to tissue bank (if applicable) (phv00394667.v1.p1)
- STM1 - Allocated for processing as (phv00394660.v1.p1)
- STM2 - Allocated for processing as (phv00394661.v1.p1)
- STM3 - Allocated for processing as (phv00394662.v1.p1)
- STM4 - Allocated for processing as (phv00394663.v1.p1)
- STM5 - Allocated for processing as (phv00394664.v1.p1)
- STORAGE_ISSUES - DNA PAXgene tube storage comments or RNA PAXgene tube storage comments or Plasma storage issues or Serum storage issues or Whole Cell Pellet storage issues (phv00394605.v1.p1)
- Temp - Temp (phv00394731.v1.p1)
- TIME_PROC_END_EMBED_START - Time between Tissue Processor Cycle Completion and Embedding (phv00394632.v1.p1)
- TIME_TRANSFERRED - Time Transferred (phv00394627.v1.p1)
- TISSUE_RECEIVED - Tissue received in Gross Room from OR (phv00394633.v1.p1)
- TOTAL - Histologic Profile Total % (should equal 100%) (phv00394688.v1.p1)
- TOTAL_PRC - Histologic Profile Total (phv00394715.v1.p1)
- TRANSFERRED_TO - Transferred to (phv00394628.v1.p1)
- TRANSPORT_PERFORMED - Transport of tissue was performed per BPV Surgical Tissue Collection and Preservation SOP (phv00394634.v1.p1)
- TUMOR_DIMENSION - Greatest tumor dimension on slide (phv00394679.v1.p1)
- TUMOR_DIMENSION_PRC - Greatest tumor dimension on slide (phv00394707.v1.p1)
- VOLUME - Volume Collected or Volume (phv00394586.v1.p1)
- WEIGHT - Weight of frozen tumor block (phv00394629.v1.p1)