Ancestry (5)
- EA_PC_1 - EA PC (principal component 1 of 5; North-South) (phv00421022.v1.p1)
- EA_PC_2 - EA PC (principal component 2 of 5; slight North-South) (phv00421023.v1.p1)
- EA_PC_3 - EA PC (principal component 3 of 5; East-West) (phv00421024.v1.p1)
- EA_PC_4 - EA PC (principal component 4 of 5; none) (phv00421025.v1.p1)
- EA_PC_5 - EA PC (principal component 5 of 5; Ashkenazi) (phv00421026.v1.p1)
Demographics (2)
- age - Subject age (phv00421021.v1.p1)
- sex - Gender of participant (phv00421019.v1.p1)
Mental Health (1)
- AFFECTION_STATUS - Schizophrenia case control status of subject (phv00421015.v1.p1)
Race and Ethnicity (1)
- race - Race of participant (phv00421020.v1.p1)
Other (26)
- ANALYTE_TYPE - Analyte Type -- all samples are RNA (phv00421041.v1.p1)
- ATP_PER_CELL_COUNT_BASELINE - ATP level adjusted by number of cells reflecting energy status of LCLs for baseline (unstimulated) sample -- positive number with values from ATP average of duplicate luminescence readings from ATP assay, corrected for concentration of cells by dividing by cell count (see PMID's 26022996, 28418402, and 3011591 for further details) for baseline (unstimulated) sample; if a dopamine stimulated sample then denoted as N/A (phv00421037.v1.p1)
- ATP_PER_CELL_COUNT_DOPAMINE - ATP level adjusted by number of cells reflecting energy status of LCLs for dopamine stimulated sample -- positive number with values from ATP average of duplicate luminescence readings from ATP assay, corrected for concentration of cells by dividing by cell count (see PMID's 26022996, 28418402, and 3011591 for further details) for dopamine stimulated sample; if a baseline (unstimulated) sample then denoted as N/A (phv00421039.v1.p1)
- BODY_SITE - Body site where sample was collected -- all are LCLs made from peripheral blood (phv00421040.v1.p1)
- CELL_COUNT_BASELINE - LCL cell count at harvest reflecting growth rate for baseline (unstimulated) sample -- positive number with values from viable cell count at harvest x10^6 (24 hrs after 0.250 x 10^6 cells/ml) (see PMID's 26022996, 28418402, and 3011591 for further details) for baseline (unstimulated) sample; if a dopamine stimulated sample then denoted as N/A (phv00421036.v1.p1)
- CELL_COUNT_DOPAMINE - LCL cell count at harvest reflecting growth rate for dopamine stimulated sample -- positive number with values from viable cell count at harvest x10^6 (24 hrs after 0.250 x 10^6 cells/ml) (see PMID's 26022996, 28418402, and 3011591 for further details) for dopamine stimulated sample; if a baseline (unstimulated) sample then denoted as N/A (phv00421038.v1.p1)
- CONSENT - Consent group as determined by DAC (phv00421010.v1.p1)
- EBV_LOAD - EBV load (viral load) of LCL (phv00421028.v1.p1)
- EBV_TRANSFORMATION_SITE - Site of EBV transformation to produce LCL (phv00421027.v1.p1)
- EXPRESSION_RNAseq_BATCH - RNAseq batch (1-5) in which sample was RNAsequenced (phv00421034.v1.p1)
- EXPRESSION_SERVICE - Name of the service provider which ran the RNAseq -- UMGC = University of Minnesota Genomics Center (formerly BMGC = Biomedical Genomics Center) (phv00421033.v1.p1)
- HISTOLOGICAL_TYPE - Cell or tissue type or subtype of sample -- all RNA samples from LCLs (phv00421043.v1.p1)
- IS_TUMOR - Tumor status (phv00421042.v1.p1)
- RNAseq_PMID_26022996 - Analyzed subject in PMID: 26022996 (outliers manuscript) (phv00421029.v1.p1)
- RNAseq_PMID_28418402 - Analyzed subject in PMID: 28418402 (baseline manuscript) (phv00421030.v1.p1)
- RNAseq_PMID_30115913 - Analyzed subject in PMID: 30115913 (dopamine manuscript) (phv00421031.v1.p1)
- SAMPLE_ID - Sample ID -- sample ID incorporates RUCDR ID (SOURCE_SUBJECT_ID), and also wave-tech-sample -- namely growing wave number or letters (with the "w" (phv00421032.v1.p1)
- SAMPLE_ID - Sample ID -- sample ID incorporates RUCDR ID (SOURCE_SUBJECT_ID), and also wave-tech-sample -- namely growing wave number or letters (with the "w" (phv00421017.v1.p1)
- SOURCE_SUBJECT_ID - Subject ID used in the Source Repository -- also known as DNA_ID, the ID number assigned by the RUCDR to this subject's DNA specimens and LCLs (lymphoblastoid cell lines) (phv00421012.v1.p1)
- SOURCE_SUBJECT_ID2 - Submitted_subject_ID for GAIN2 (dbGaP study ID phs000021) vs. NIMH_nonGAIN_Schizophrenia (dbGaP study ID phs000167) (phv00421014.v1.p1)
- STIMULATION_STATUS - Indication whether LCL was baseline (unstimulated) or dopamine-stimulated (phv00421035.v1.p1)
- SUBJECT_ID - De-identified Subject ID (phv00421018.v1.p1)
- SUBJECT_ID - De-identified Subject ID -- Also known as the GAIN/nonGAIN ID, this is the 5 digit ID you will find in GAIN and nonGAIN data (i.e., GWAS data deposited into dbGaP). GAIN is dbGaP study ID phs000021; nonGAIN is dbGaP study ID phs000167. (phv00421009.v1.p1)
- SUBJECT_ID - De-identified Subject ID -- Also known as the GAIN/nonGAIN ID, this is the 5 digit ID you will find in GAIN and nonGAIN data (i.e., GWAS data deposited into dbGaP). GAIN is dbGaP study ID phs000021; nonGAIN is dbGaP study ID phs000167. (phv00421016.v1.p1)
- SUBJECT_SOURCE - Source repository where subjects originate -- all from RUCDR (Rutgers University Cell and DNA Repository) (phv00421011.v1.p1)
- SUBJECT_SOURCE2 - Name of dbGaP GWAS for subject -- GAIN2 = GAIN = dbGaP study ID phs000021 -- NIMH_nonGAIN_Schizophrenia = nonGAIN = dbGaP study ID phs000167 (phv00421013.v1.p1)