Demographics (2)
- AGE - Subject age at enrollment (phv00430979.v1.p1)
- SEX - Self-reported sex (phv00430978.v1.p1)
Other (30)
- AFFECTION_STATUS - Case control status of the subject for influenza infection (phv00430977.v1.p1)
- ANALYTE_TYPE - Analyte Type (phv00430999.v1.p1)
- BODY_SITE - Body site where sample was collected (phv00430998.v1.p1)
- cell_state_new - Cellular infection states determined by ZINB model and SVM classifier (phv00430995.v1.p1)
- Celltype - Celltype (phv00430992.v1.p1)
- CONSENT - Consent group as determined by DAC (phv00430973.v1.p1)
- DATA_TYPE - Data type (phv00431000.v1.p1)
- DIAGNOSTIC_TEST - Diagnostic test based on rapid antigen test (RAT) and respiratory virus panel (RVP) (phv00430982.v1.p1)
- Donor - Donor, same to the subjectID (phv00430990.v1.p1)
- FLOWCELL_BATCH - Flowcell number when pooled for sequencing (phv00431002.v1.p1)
- Infection - Infection either by IAV or IBV, or healthy control (HC) (phv00430986.v1.p1)
- metacluster - Metacluster (phv00430991.v1.p1)
- pred_infection - Infection status predicted by ZINB model, selected donors only (phv00430994.v1.p1)
- RECENT_VACCINATION - Subject recent flu vaccination history (phv00430980.v1.p1)
- SAMPLE_ID - Cell name (phv00430983.v1.p1)
- SAMPLE_ID - Sample ID (phv00430997.v1.p1)
- SAMPLE_ID - Sample ID (phv00430975.v1.p1)
- SAMPLING_TIME - Number of days prior to sample collection in which the subject experienced symptoms (phv00430981.v1.p1)
- SEQUENCING_CENTER - Name of the center which conducted sequencing (phv00431001.v1.p1)
- SEQUENCING_PLATFORM - Sequencing platform (phv00431003.v1.p1)
- size_factor - Size factor determined by scran normalization method (phv00430989.v1.p1)
- SUBJECT_ID - Subject ID (phv00430976.v1.p1)
- SUBJECT_ID - Subject ID (phv00430972.v1.p1)
- SUBJECT_ID - Subject ID (phv00430974.v1.p1)
- UMI_sum - Library size for each cell (phv00430984.v1.p1)
- vload - Viral load: calculated as viral raw counts divided by library size (phv00430985.v1.p1)
- vload_counts - Viral transcript raw counts (phv00430993.v1.p1)
- vload_state_new - Viral load states determined by ZINB model and SVM classifier (phv00430996.v1.p1)
- x - TSNE coordinate: x axis (phv00430987.v1.p1)
- y - TSNE coordinate: y axis (phv00430988.v1.p1)