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Changes in Oral and Gut Microbiota and Incidence and Severity of Patient-Reported Symptoms in Pre- and Post-Kidney Transplant Patients

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

M. Robinson, Davis J. McCarthy, G. Smyth. (2009). Bioinformatics. Cited 36,556 times. https://doi.org/10.1093/bioinformatics/btp616

Fast and sensitive protein alignment using DIAMOND

Benjamin Buchfink, C. Xie, D. Huson. (2014). Nature Methods. Cited 10,724 times. https://doi.org/10.1038/nmeth.3176

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

Davis J. McCarthy, Yunshun Chen, G. Smyth. (2012). Nucleic Acids Research. Cited 4,639 times. https://doi.org/10.1093/nar/gks042

Mind-altering microorganisms: the impact of the gut microbiota on brain and behaviour

J. Cryan, T. Dinan. (2012). Nature Reviews Neuroscience. Cited 3,940 times. https://doi.org/10.1038/nrn3346

Defining the human microbiome.

L. Ursell, J. Metcalf, L. Parfrey, et al. (2012). Nutrition reviews. Cited 1,038 times. https://doi.org/10.1111/j.1753-4887.2012.00493.x

MEGAN analysis of metagenomic data.

D. Huson, Alexander F. Auch, J. Qi, et al. (2007). Genome research. Cited 949 times. https://doi.org/10.1101/GR.5969107

The microbiome‐gut‐brain axis: from bowel to behavior

J. Cryan, S. O'Mahony. (2011). Neurogastroenterology & Motility. Cited 928 times. https://doi.org/10.1111/j.1365-2982.2010.01664.x

Analysis of the microbiome: Advantages of whole genome shotgun versus 16S amplicon sequencing.

R. Ranjan, A. Rani, Ahmed A. Metwally, et al. (2016). Biochemical and biophysical research communications. Cited 797 times. https://doi.org/10.1016/j.bbrc.2015.12.083

Microbiome-wide association studies link dynamic microbial consortia to disease

J. Gilbert, R. Quinn, Justine W. Debelius, et al. (2016). Nature. Cited 643 times. https://doi.org/10.1038/nature18850

Microbes, Immunity, and Behavior: Psychoneuroimmunology Meets the Microbiome

T. Dinan, J. Cryan. (2017). Neuropsychopharmacology. Cited 202 times. https://doi.org/10.1038/npp.2016.103

Gut Microbiota and Tacrolimus Dosing in Kidney Transplantation

J. Lee, T. Muthukumar, D. Dadhania, et al. (2015). PLoS ONE. Cited 179 times. https://doi.org/10.1371/journal.pone.0122399

Hypothesis testing and statistical analysis of microbiome

Yinglin Xia, Jun Sun. (2017). Genes & Diseases. Cited 168 times. https://doi.org/10.1016/j.gendis.2017.06.001

Human Microbiota Characterization in the Course of Renal Transplantation

W. F. Fricke, Cynthia Maddox, Yang Song, et al. (2014). American Journal of Transplantation. Cited 160 times. https://doi.org/10.1111/ajt.12588

SUPER-FOCUS: a tool for agile functional analysis of shotgun metagenomic data

G. G. Z. Silva, Kevin T. Green, B. Dutilh, et al. (2015). Bioinformatics. Cited 158 times. https://doi.org/10.1093/bioinformatics/btv584

Symptom experience after solid organ transplantation.

C. Kugler, S. Geyer, J. Gottlieb, et al. (2009). Journal of psychosomatic research. Cited 96 times. https://doi.org/10.1016/j.jpsychores.2008.07.017

Fatigue, anxiety, depression and quality of life in kidney transplant recipients, haemodialysis patients, patients with a haematological malignancy and healthy controls.

Marit S. van Sandwijk, Doaa Al Arashi, Fons M van de Hare, et al. (2019). Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association. Cited 73 times. https://doi.org/10.1093/ndt/gfy103

Validation of the Patient-Reported Outcomes Measurement Information System (PROMIS)-57 and -29 item short forms among kidney transplant recipients

Evan Tang, O. Ekundayo, J. Peipert, et al. (2018). Quality of Life Research. Cited 71 times. https://doi.org/10.1007/s11136-018-2058-2

Gut microbiota and renal transplant outcome.

M. Ardalan, S. Z. Vahed. (2017). Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie. Cited 43 times. https://doi.org/10.1016/j.biopha.2017.02.114

The influence of the microbiota on the immune response to transplantation

C. Bartman, A. Chong, M. Alegre. (2015). Current Opinion in Organ Transplantation. Cited 36 times. https://doi.org/10.1097/MOT.0000000000000150

Symptom burden and associated factors in renal transplant patients in the U.K.

M. Afshar, I. Rebollo-Mesa, E. Murphy, et al. (2012). Journal of pain and symptom management. Cited 35 times. https://doi.org/10.1016/j.jpainsymman.2011.08.005

Current status of the microbiome in renal transplantation

Sarwat Ahmad, J. Bromberg. (2016). Current Opinion in Nephrology and Hypertension. Cited 27 times. https://doi.org/10.1097/MNH.0000000000000262