Breast Neoplasms study with Methylation (CpG) data on dbGaP (1,550 participants)

phs002688 — CIDR Estrogen Receptor Negative Breast Cancer in African American Women:    DNA Methylation, Reproductive Events, and Mammary Epithelial Cell    Populations

<p>We conducted methylation profiling of breast tumor DNA from Formalin-Fixed Paraffin-Embedded (FFPE) samples for 1,550 cases from a cohort of Black women from the Black Women’s Health Study (BWHS), the Women’s Circle of Health Study (WCHS), and from the Pathways Study using the Illumina MethylationEPIC array. We will examine differentially methylated loci (DML) between ER+ and ER- tumors, and by age at onset of breast cancer. Combining these data with previously analyzed samples (n=385), we will consider associations between reproductive risk factors and top DML by age at diagnosis and ER status, examining the complex relationships between methylation, tumor and patient characteristics, and reproductive risk factors using structural equation modeling.<br></p>

CIDR Estrogen Receptor Negative Breast Cancer in African American Women:    DNA Methylation, Reproductive Events, and Mammary Epithelial Cell    Populations