Leukemia, Myeloid, Acute study with ATAC-seq, RNA-Seq + 2 more data on dbGaP (38 participants)

phs003015 — Ipilimumab and Decitabine in Treating Patients With Relapsed or    Refractory Myelodysplastic Syndrome or Acute Myeloid Leukemia

The <a href="https://ctep.cancer.gov/initiativesprograms/etctn.htm">NCI Experimental Therapeutics Clinical Trials Network (ETCTN)/Cancer Therapy Evaluation Program (CTEP)</a> 10026 study (<a href="https://clinicaltrials.gov/ct2/show/NCT02890329">NCT02890329</a>) tested combined ipilimumab and decitabine treatment in two cohorts: Arm A consisted of patients with relapsed acute myeloid leukemia (AML) after allogeneic hematopoietic stem cell transplantation. Arm B consisted of patients with advanced myelodysplastic syndrome (MDS) or AML that did not previously undergo stem cell transplantation. During the study, peripheral blood and bone marrow samples were obtained from study participants at study entry (screening), following the first lead-in cycle of decitabine monotherapy, during combined treatment with decitabine and ipilimumab, and at the end of treatment.This study tested the combination of the CTLA-4 blocking antibody ipilimumab and the DNA methyltransferase inhibitor decitabine in advanced myeloid disease in the transplant-naive and post-transplant context. The samples were used for bulk and single cell RNA sequencing (scRNA-seq) as well as whole exome sequencing (WES).