Genetic Markers study with SNP Genotypes (NGS), WGS data on dbGaP (4 participants)

phs003216 — Whole Genome Sequencing Analysis in a Family of Discordant Twins With    Non-Syndromic Microtia and Hemifacial Microsomia: Identification of    Novel Candidate Genes and Variants

This research is a non-NIH effort to discover the pathogenesis of non-syndromic microtia and to detect potential candidate genes. Microtia (OMIM <a href="https://omim.org/entry/600674">600674</a>, <a href="https://omim.org/entry/612290">612290</a>, <a href="https://omim.org/entry/251800">251800</a>) is a spectrum of congenital anomalies and facial abnormalities, 90% of the cases followed by hearing loss. Two types of the disease are described in terms of connection to the affected syndromes: anomalies (syndromic) and only clinical manifestation (non-syndromic) associated with other symptoms. Though the exact pathogenesis of microtia remains unknown, pathogenic genes of majority of the microtia syndromic types have been identified. However, the genetic mutation of the non-syndromic microtia has not been confirmed. In this study, whole genome sequencing (WGS) was utilized to screen mutations in monozygotic discordant twins of congenital microtia-atresia and their family members. One of the twins, along with her grandfather, was discordant for microtia-atresia. By bioinformatic analysis of the WGS data from monozygotic twins with microtia and their non-microtia relatives, we proposed that among 28 identified potential genes, 4 of them (<a href="https://www.ncbi.nlm.nih.gov/gene/23019">CNOT1</a>, <a href="https://www.ncbi.nlm.nih.gov/gene/83538">ODAD4</a>, <a href="https://www.ncbi.nlm.nih.gov/gene/6913">TBX15</a>, and <a href="https://www.ncbi.nlm.nih.gov/gene/126326">GIPC3</a>) could be more responsible for non-syndromic microtia development and phenotypic features. Interested investigators may request to access the DNA genomic sequencing data of the study participants via dbGaP <a href="https://dbgap.ncbi.nlm.nih.gov/aa/wga.cgi?page=login">authorized access</a>. In addition to raw genomic sequencing data, datasets of germline mutations and candidate gene mutations may also be available for investigators to request.

Whole Genome Sequencing Analysis in a Family of Discordant Twins With    Non-Syndromic Microtia and Hemifacial Microsomia: Identification of    Novel Candidate Genes and Variants