Liposarcoma study with ChIP-Seq, Hi-C + 1 more data on dbGaP (26 participants)

phs003272 — Supraphysiologic MDM2 Expression Impacts P53-Independent Chromatin    Networks and Therapeutic Responses in Sarcoma

<p>We collected multiple liposarcoma samples from different patients, including different subtypes (DD, WD) and normal adipose tissue as control. This study provides the biggest liposarcoma cohort to date, and examined the molecular regulatory circuits associated with MDM2 overexpression. To this end, we obtained not only RNA-seq data, but also ChIP-seq from Jun, RUNX, MDM2, P53 and H3K27ac, as well as hiChIP from tumor samples and cell lines. We found that MDM2 binds to thousands of genes involved in cellular growth and stress response in a P53-independent manner. Furthermore, we described these active genes engaged in multi-way topological interactions that resemble transcriptional hubs. </p>