Studies
Integrated Epigenetic Maps of Human Embryonic, Extraembryonic and Adult Cells
Integrated Epigenetic Maps of Human Embryonic, Extraembryonic and Adult Cells
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Overview
Selected Publications (13)
The clonal and mutational evolution spectrum of primary triple-negative breast cancers
Sohrab P. Shah, Andrew Roth, R. Goya, et al.. (2012). Nature. Cited 1,942 times.
https://doi.org/10.1038/nature10933
Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications
R. Harris, Ting Wang, C. Coarfa, et al.. (2010). Nature biotechnology. Cited 713 times.
https://doi.org/10.1038/nbt.1682
The Human Epigenome Browser at Washington University
Xin Zhou, Brett B. Maricque, Mingchao Xie, et al.. (2011). Nature Methods. Cited 313 times.
https://doi.org/10.1038/nmeth.1772
DNA hypomethylation within specific transposable element families associates with tissue-specific enhancer landscape
Mingchao Xie, C. Hong, Bo Zhang, et al.. (2013). Nature genetics. Cited 218 times.
https://doi.org/10.1038/ng.2649
Exploring long-range genome interactions using the WashU Epigenome Browser
Xin Zhou, R. Lowdon, Daofeng Li, et al.. (2013). Nature Methods. Cited 212 times.
https://doi.org/10.1038/nmeth.2440
Comparative Epigenomic Annotation of Regulatory DNA
Shu Xiao, Dan Xie, Xiaoyi Cao, et al.. (2012). Cell. Cited 209 times.
https://doi.org/10.1016/j.cell.2012.04.029
Functional DNA methylation differences between tissues, cell types, and across individuals discovered using the M&M algorithm
Bo Zhang, Yan Zhou, Nan Lin, et al.. (2013). Genome Research. Cited 191 times.
https://doi.org/10.1101/gr.156539.113
Visualizing genomes: techniques and challenges
C. Nielsen, Michael Cantor, I. Dubchak, et al.. (2010). Nature Methods. Cited 167 times.
https://doi.org/10.1038/nmeth.1422
Spatiotemporal clustering of the epigenome reveals rules of dynamic gene regulation
P. Yu, Shu Xiao, Xiaoyun Xin, et al.. (2013). Genome Research. Cited 72 times.
https://doi.org/10.1101/gr.144949.112
Using the Wash U Epigenome Browser to Examine Genome‐Wide Sequencing Data
Xin Zhou, Ting Wang. (2012). Current Protocols in Bioinformatics. Cited 62 times.
https://doi.org/10.1002/0471250953.bi1010s40
DNA unmethylome profiling by covalent capture of CpG sites
Edita Kriukienė, V. Labrie, Tarang Khare, et al.. (2013). Nature Communications. Cited 59 times.
https://doi.org/10.1038/ncomms3190
Spark: A navigational paradigm for genomic data exploration
C. Nielsen, H. Younesy, H. O’Geen, et al.. (2012). Genome Research. Cited 35 times.
https://doi.org/10.1101/gr.140665.112
methylC Track: visual integration of single-base resolution DNA methylation data on the WashU EpiGenome Browser
Xin Zhou, Daofeng Li, R. Lowdon, et al.. (2014). Bioinformatics. Cited 30 times.
https://doi.org/10.1093/bioinformatics/btu191
