Genomic Factors Involved in Chromosome Rearrangements

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Demographics (1)

Other (17)

  • AFFECTION_STATUS - Case control status of the subject. All subjects have chromosomal rearrangements. (phv00508198.v1.p1)
  • ANALYTE_TYPE - Analyte Type (phv00221076.v1.p1)
  • AVG_CNV_COVERAGE - The mean, for the CNV region 2K windows, reported in the avgNormalizedCoverage data column from the sequencing center file, cnvDetailsDiploidBeta.tsv (phv00221073.v1.p1)
  • AVG_GENOME_COVERAGE - The mean of all (genome-wide) 2K windows reported in the avgNormalizedCoverage data column from the sequencing center file, cnvDetailsDiploidBeta.tsv (phv00221072.v1.p1)
  • BODY_SITE - Body site where sample was collected (phv00221075.v1.p1)
  • CNV_REGION - Genomic coordinates for region of copy number variation identified in the sequencing center file, cnvDetailsDiploidBeta.tsv, based on 2K window length (phv00221071.v1.p1)
  • CONSENT - Consent group as determined by DAC (phv00221059.v1.p1)
  • IS_CHROMOTHRIPSIS - Chromothripsis status (phv00226583.v1.p1)
  • IS_TUMOR - Tumor status (phv00221077.v1.p1)
  • PLOIDY_CALL - Ploidy call for CNV region reported by sequencing center file, cnvDetailsDiploidBeta.tsv (phv00221074.v1.p1)
  • SAMPLE_ID - De-identified Sample ID from sequencing center (phv00221070.v1.p1)
  • SAMPLE_ID - Sample ID used by sequencing center (phv00221064.v1.p1)
  • SEQUENCING_CENTER - Name of the center which conducted sequencing (phv00221069.v1.p1)
  • SUBJECT_ID - Subject ID (phv00221068.v1.p1)
  • SUBJECT_ID - Subject ID (phv00221058.v1.p1)
  • SUBJECT_ID - Subject ID (phv00221063.v1.p1)
  • SUBJECT_ID - De-identified Subject ID (phv00221066.v1.p1)