NextGen Consortium: The iPSCORE (iPSC Collection for Omic Research) Resource for Studying the Impact of Genetic Variation on Molecular Phenotypes

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Large-Scale Profiling Reveals the Influence of Genetic Variation on Gene Expression in Human Induced Pluripotent Stem Cells.

Christopher M. DeBoever, He Li, David A. Jakubosky, et al. (2017). Cell stem cell. Cited 162 times. https://doi.org/10.1016/j.stem.2017.03.009

iPSCORE: A Resource of 222 iPSC Lines Enabling Functional Characterization of Genetic Variation across a Variety of Cell Types

Athanasia D. Panopoulos, M. D’Antonio, P. Benaglio, et al. (2017). Stem Cell Reports. Cited 127 times. https://doi.org/10.1016/j.stemcr.2017.03.012

Properties of structural variants and short tandem repeats associated with gene expression and complex traits

David A. Jakubosky, M. D’Antonio, M. Bonder, et al. (2020). Nature Communications. Cited 90 times. https://doi.org/10.1038/s41467-020-16482-4

Insights into the Mutational Burden of Human Induced Pluripotent Stem Cells from an Integrative Multi-Omics Approach.

M. D’Antonio, P. Benaglio, David A. Jakubosky, et al. (2018). Cell reports. Cited 74 times. https://doi.org/10.1016/j.celrep.2018.06.091

Association of Human iPSC Gene Signatures and X Chromosome Dosage with Two Distinct Cardiac Differentiation Trajectories

Agnieszka D’Antonio-Chronowska, Margaret K. R. Donovan, William W. Young Greenwald, et al. (2019). Stem Cell Reports. Cited 48 times. https://doi.org/10.1016/j.stemcr.2019.09.011

Systematic genetic analysis of the MHC region reveals mechanistic underpinnings of HLA type associations with disease

M. D’Antonio, J. Reyna, David A. Jakubosky, et al. (2019). eLife. Cited 46 times. https://doi.org/10.1101/564161

Allele-specific NKX2-5 binding underlies multiple genetic associations with human electrocardiographic traits

P. Benaglio, Agnieszka D’Antonio-Chronowska, Wubin Ma, et al. (2019). Nature genetics. Cited 40 times. https://doi.org/10.1038/s41588-019-0499-3

Aberrant DNA Methylation in Human iPSCs Associates with MYC-Binding Motifs in a Clone-Specific Manner Independent of Genetics.

Athanasia D. Panopoulos, Athanasia D. Panopoulos, Erin N. Smith, et al. (2017). Cell stem cell. Cited 37 times. https://doi.org/10.1016/j.stem.2017.03.010

Human iPSC-Derived Retinal Pigment Epithelium: A Model System for Prioritizing and Functionally Characterizing Causal Variants at AMD Risk Loci

Erin N. Smith, Agnieszka D’Antonio-Chronowska, William W. Greenwald, et al. (2019). Stem Cell Reports. Cited 35 times. https://doi.org/10.1016/j.stemcr.2019.04.012

Discovery and quality analysis of a comprehensive set of structural variants and short tandem repeats

David A. Jakubosky, Erin N. Smith, M. D’Antonio, et al. (2019). Nature Communications. Cited 28 times. https://doi.org/10.1038/s41467-020-16481-5

In heart failure reactivation of RNA-binding proteins is associated with the expression of 1,523 fetal-specific isoforms

M. D’Antonio, Jennifer P. Nguyen, Timothy D. Arthur, et al. (2022). PLoS Computational Biology. Cited 28 times. https://doi.org/10.1371/journal.pcbi.1009918

Complex regulatory networks influence pluripotent cell state transitions in human iPSCs

Timothy D. Arthur, Jennifer P. Nguyen, Agnieszka D’Antonio-Chronowska, et al. (2024). Nature Communications. Cited 17 times. https://doi.org/10.1038/s41467-024-45506-6

Fine mapping spatiotemporal mechanisms of genetic variants underlying cardiac traits and disease

M. D’Antonio, Timothy D. Arthur, Jennifer P. Nguyen, et al. (2021). Nature Communications. Cited 15 times. https://doi.org/10.1038/s41467-023-36638-2

In vitro Differentiation of Human iPSC-derived Retinal Pigment Epithelium Cells (iPSC-RPE).

Agnieszka D’Antonio-Chronowska, M. D’Antonio, K. Frazer. (2019). Bio-protocol. Cited 13 times. https://doi.org/10.21769/bioprotoc.3469

In vitro Differentiation of Human iPSC-derived Cardiovascular Progenitor Cells (iPSC-CVPCs).

Agnieszka D’Antonio-Chronowska, M. D’Antonio, K. Frazer. (2020). Bio-protocol. Cited 6 times. https://doi.org/10.21769/BIOPROTOC.3755

eQTL mapping in fetal-like pancreatic progenitor cells reveals early developmental insights into diabetes risk

Jennifer P. Nguyen, Timothy D. Arthur, Kyohei Fujita, et al. (2023). Nature Communications. Cited 4 times. https://doi.org/10.1038/s41467-023-42560-4

Subtle changes in chromatin loop contact propensity are associated with differential gene regulation and expression

William W. Greenwald, He Li, P. Benaglio, et al. (2019). Nature Communications. Cited 1 times. https://doi.org/10.1038/s41467-019-08940-5