NHLBI TOPMed: Genetic Epidemiology of COPD (COPDGene)

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Demographics (5)

Other (63)

  • ANALYTE_ISOLATION_BATCH_ID - Batch ID created by the multiomics core (phv00541695.v1.p5)
  • ANALYTE_ISOLATION_LAB - Name of the omics center to which the samples were isolated (phv00541697.v1.p5)
  • ANALYTE_ISOLATION_YEAR - Year sample was isolated for analysis my multiomics core (phv00541696.v1.p5)
  • ANALYTE_SAMPLE_ID - Sample ID created by the multiomics core (phv00541694.v1.p5)
  • ANALYTE_TYPE - Type of TOPMed omics that was used for analysis; "DNA", RNA", Protein", "Metabolites" (phv00541691.v1.p5)
  • ANALYTE_TYPE - Type of omics assay to be performed, generally one of the following four values: "RNA", "DNA", "protein", or "metabolite" (phv00541711.v1.p5)
  • ANALYTE_TYPE - Type of omics assay to be performed, generally one of the following four values: "RNA", "DNA", "protein", or "metabolite" (phv00541725.v1.p5)
  • ANALYTE_TYPE - Analyte Type (phv00253407.v6.p5)
  • ASSAY_LAB - Name of the omics center to which the samples were sent (phv00541700.v1.p5)
  • Barcode - Illumina chip Sentrix barcode (phv00541713.v1.p5)
  • BODY_SITE - Anatomical site at which biosample was taken, e.g. "Nasal epithelium", "Venous Blood" (phv00541686.v1.p5)
  • BODY_SITE - Anatomical site at which biosample was taken, e.g. "arm vein", "lung", "inner oral cavity" (phv00541707.v1.p5)
  • BODY_SITE - Anatomical site at which biosample was taken, e.g. "arm vein", "lung", "inner oral cavity" (phv00541724.v1.p5)
  • BODY_SITE - Body site where sample was collected (phv00253406.v6.p5)
  • Collection_visit - Study visit when the primary biosample was collected (relevant for longitudianal studies with multiple waves of clinic visits). (phv00541723.v1.p5)
  • COLLECTION_VISIT - Study visit when the primary biosample was collected (relevant for longitudianal studies with multiple waves of clinic visits). (phv00541685.v1.p5)
  • collection_year - Year in which primary biosample was collected (informative for storage time) (phv00541704.v1.p5)
  • Collection_year - Year in which primary biosample was collected (informative for storage time) (phv00541722.v1.p5)
  • collectionphase - Study visit when the primary biosample was collected (relevant for longitudianal studies with multiple waves of clinic visits). (phv00541703.v1.p5)
  • CONSENT - Consent group as determined by DAC (phv00253400.v6.p5)
  • decodeDate - Earliest date shown for 'AutoDecode' action in the .idat 'RunInfo' table. Presumably related to the chip manufacturing date. (phv00541715.v1.p5)
  • extractDate - Earliest date shown for 'Scan', 'Register' and 'Extract' actions in the .idat 'RunInfo' table. Presumably date when the chip was scanned after hybridization, extension and staining. (phv00541716.v1.p5)
  • Funding_Source - Funding Source (phv00290088.v5.p5)
  • HISTOLOGICAL_TYPE - Cell or tissue subtype derived from the Primary biosample, or if no subfractionation was done, the primary biosample type; e.g. plasma for proteins and metabolites; PBMC, T-cell, or monocyte for RNA; blood buffy coat for DNA (phv00541689.v1.p5)
  • HISTOLOGICAL_TYPE - Cell or tissue subtype derived from the Primary biosample, or if no subfractionation was done, the primary biosample type; e.g. plasma for proteins and metabolites; PBMC, T-cell, or monocyte for RNA; blood buffy coat for DNA (phv00541710.v1.p5)
  • HISTOLOGICAL_TYPE - Cell or tissue subtype derived from the Primary biosample, or if no subfractionation was done, the primary biosample type; e.g. plasma for proteins and metabolites; PBMC, T-cell, or monocyte for RNA; blood buffy coat for DNA (phv00541726.v1.p5)
  • HISTOLOGICAL_TYPE - Cell or tissue type or subtype of sample (phv00253409.v6.p5)
  • IS_TUMOR - Tumor status of the sample. For non-cancer studies, all values should be "no". For cancer studies, values should be "yes" or "no". (NCBI Biosample characteristic) (phv00541690.v1.p5)
  • IS_TUMOR - Tumor status of the sample. For non-cancer studies, all values should be "no". For cancer studies, values should be "yes" or "no". (NCBI Biosample characteristic) (phv00541706.v1.p5)
  • IS_TUMOR - Tumor status of the sample. For non-cancer studies, all values should be "no". For cancer studies, values should be "yes" or "no". (NCBI Biosample characteristic) (phv00541727.v1.p5)
  • IS_TUMOR - Tumor status (phv00253408.v6.p5)
  • nSNPsRead - Value reported as 'nSNPsRead' in Illumina .idat file header (phv00541714.v1.p5)
  • Omics_assay_lab - Name of the omics center to which the samples were sent (phv00541712.v1.p5)
  • Omics_assay_lab - Name of the omics center to which the samples were sent (phv00541730.v1.p5)
  • p.0.01 - Fraction of CpG sites which pass a detection p-value threshold of 0.01 (phv00541718.v1.p5)
  • p.0.05 - Fraction of CpG sites which pass a detection p-value threshold of 0.05 (phv00541717.v1.p5)
  • Primary_biosample_ID - De-identified biorepository ID for the tissue sample that was collected. Relevant when multiple biosamples may have been taken from the same subject at different times; also relevant when multiple analytes were extracted from the same primary biosample (e.g. blood draw); identifier must be anonymized (de-identified) (phv00541731.v1.p5)
  • PRIMARY_BIOSAMPLE_ID - De-identified biorepository ID for the tissue sample that was collected. Relevant when multiple biosamples may have been taken from the same subject at different times; also relevant when multiple analytes were extracted from the same primary biosample (e.g. blood draw); identifier must be anonymized (de-identified) (phv00541692.v1.p5)
  • Primary_biosample_type - Type of primary biosample, e.g. "venous blood", "lung epithelium"; be as specific as possible (phv00541705.v1.p5)
  • Primary_biosample_type - Type of primary biosample, e.g. "venous blood", "lung epithelium"; be as specific as possible (phv00541732.v1.p5)
  • PRIMARY_BIOSAMPLE_TYPE - Type of primary biosample, e.g. "venous blood", "lung epithelium"; be as specific as possible (phv00541693.v1.p5)
  • Sample_container_ID - Identifier for sample plate, box or other container used for shipping samples to the assay center (phv00541733.v1.p5)
  • SAMPLE_CONTAINER_ID - Identifier for sample plate, box or other container used for shipping samples to the assay center (phv00541698.v1.p5)
  • SAMPLE_ID - TOPMed identifier for each sample aliquot sent to the assay center. MUST use TOPMed identifiers - TOR (RNA), TOP (protein), TOM (metabolite), TOE (DNA for methylation assay) (phv00541682.v1.p5)
  • SAMPLE_ID - TOPMed identifier for each sample aliquot sent to the assay center. MUST use TOPMed identifiers - TOR (RNA), TOP (protein), TOM (metabolite), TOE (DNA for methylation assay) (phv00541701.v1.p5)
  • SAMPLE_ID - TOPMed identifier for each sample aliquot sent to the assay center. MUST use TOPMed identifiers - TOR (RNA), TOP (protein), TOM (metabolite), TOE (DNA for methylation assay) (phv00541719.v1.p5)
  • SAMPLE_ID - De-identified Sample ID (phv00253405.v6.p5)
  • SAMPLE_ID - Sample ID (phv00253403.v6.p5)
  • Sample_type - Identifier of experiemtnal material: COPDGene, pooled-control-samples, nist-1950-controls (phv00541720.v1.p5)
  • Sample_well_ID - Identifier for well, tube, or other subdivision of the sample shipping container (phv00541734.v1.p5)
  • SAMPLE_WELL_ID - Identifier for well, tube, or other subdivision of the sample shipping container (phv00541699.v1.p5)
  • SEQUENCING_CENTER - Name of the center which conducted sequencing (phv00253410.v6.p5)
  • Study_Name - TOPMed Participating Study Name (phv00290091.v5.p5)
  • SUBJECT_ID - Subject ID (phv00253399.v6.p5)
  • SUBJECT_ID - Subject ID (phv00253402.v6.p5)
  • TOPMed_Phase - TOPMed Phase for Whole Genome Sequencing (phv00290089.v5.p5)
  • TOPMed_Project - TOPMed Project (phv00290090.v5.p5)
  • UBERON_ID - UBERON ontology identifier for type of primary biosample; value is "0013756" for venous blood, https://www.ebi.ac.uk/ols/ontologies/uberon for others (phv00541687.v1.p5)
  • UBERON_ID - UBERON ontology identifier for type of primary biosample; value is "0013756" for venous blood, https://www.ebi.ac.uk/ols/ontologies/uberon for others (phv00541708.v1.p5)
  • UBERON_ID - UBERON ontology identifier for type of primary biosample; value is "0013756" for venous blood, https://www.ebi.ac.uk/ols/ontologies/uberon for others (phv00541728.v1.p5)
  • UBERON_Term - UBERON ontology term for type of primary biosample, e.g. "venous blood", https://www.ebi.ac.uk/ols/ontologies/uberon for others (phv00541688.v1.p5)
  • UBERON_Term - UBERON ontology term for type of primary biosample, e.g. "venous blood", https://www.ebi.ac.uk/ols/ontologies/uberon for others (phv00541709.v1.p5)
  • UBERON_Term - UBERON ontology term for type of primary biosample, e.g. "venous blood", https://www.ebi.ac.uk/ols/ontologies/uberon for others (phv00541729.v1.p5)