The ClinSeq Project: Piloting Large-Scale Genome Sequencing for Research in Genomic Medicine
Anthropometry (4)
- Exam_Ab_circumference_cm - Measured abdominal girth (phv00252564.v2.p1)
- Exam_Height_cm - Measured height (phv00252561.v2.p1)
- Exam_OFC_cm - Measured occipitofrontal circumference (phv00252563.v2.p1)
- Exam_Weight_kg - Weight in kg (phv00252562.v2.p1)
Biomarkers (71)
- Apolipo_APOA5 - Apolipoprotein A-1 (phv00252440.v2.p1)
- Apolipo_APOAI - Apolipoprotein A1 (phv00252439.v2.p1)
- Apolipo_APOB - Apolipoprotein B (phv00252441.v2.p1)
- Apolipo_APOB5 - Apolipoprotein B (phv00252442.v2.p1)
- Apolipo_APOBAI - Ratio Apo B/A1 (phv00252443.v2.p1)
- CBC_HCT - Hematocrit (phv00252455.v2.p1)
- CBC_HGB - Hemoglobin (phv00252454.v2.p1)
- CBC_MCH - Mean corpuscular hemoglobin (phv00252457.v2.p1)
- CBC_MCHC - Mean corpuscular hemoglobin concentration (phv00252458.v2.p1)
- CBC_MCV - Mean corpuscular volume (phv00252456.v2.p1)
- CBC_MPV - Mean platelet volume (phv00252461.v2.p1)
- CBC_PLT - Platelets (phv00252460.v2.p1)
- CBC_RBC - RBC Count (phv00252453.v2.p1)
- CBC_RDW - RBC Distribution Width (phv00252459.v2.p1)
- CBC_WBC - WBC Count (phv00252452.v2.p1)
- Chem20_ALB - Albumin (phv00252484.v2.p1)
- Chem20_ALB5 - Albumin (phv00252485.v2.p1)
- Chem20_ALK5 - Alkaline Phosphatase (phv00252505.v2.p1)
- Chem20_ALKP - Alkaline Phosphatase (phv00252504.v2.p1)
- Chem20_ALT - ALT/GPT (Alanine Trans.) (phv00252506.v2.p1)
- Chem20_ALT05 - ALT/GPT (Alanine Trans.) (phv00252507.v2.p1)
- Chem20_AST - AST/GOT (Aspartate Trans.) (phv00252508.v2.p1)
- Chem20_AST05 - AST/GOT (Aspartate Trans.) (phv00252509.v2.p1)
- Chem20_BILIDIR - AST/GOT (Aspartate Trans.) (phv00252512.v2.p1)
- Chem20_BILITOT - AST/GOT (Aspartate Trans.) (phv00252510.v2.p1)
- Chem20_BUN - Urea Nitrogen (blood) (phv00252502.v2.p1)
- Chem20_BUN5 - Urea Nitrogen (blood) (phv00252503.v2.p1)
- Chem20_CK - Creatine Kinase, Total (phv00252518.v2.p1)
- Chem20_CK5 - CK, Total (phv00252519.v2.p1)
- Chem20_CREAT - Creatinine (phv00252500.v2.p1)
- Chem20_CRET7 - Creatinine (phv00252501.v2.p1)
- Chem20_DBIL5 - AST/GOT (Aspartate Trans.) (phv00252513.v2.p1)
- Chem20_GLU - Glucose (phv00252482.v2.p1)
- Chem20_GLU5 - Glucose (phv00252483.v2.p1)
- Chem20_LDH - LD (Lactate Dehydrogen.) (phv00252514.v2.p1)
- Chem20_LDH05 - LD (Lactate Dehydrogen.) (phv00252515.v2.p1)
- Chem20_PROT - Protein, Total (phv00252516.v2.p1)
- Chem20_PROT5 - Protein, Total (phv00252517.v2.p1)
- Chem20_TBIL5 - AST/GOT (Aspartate Trans.) (phv00252511.v2.p1)
- Chem20_URIC - Uric Acid (phv00252520.v2.p1)
- Chem20_URIC5 - Uric Acid (phv00252521.v2.p1)
- Cpeptide_CPEP - C-Peptide, Serum (phv00252539.v2.p1)
- Cpeptide_CPPT - C-Peptide, Serum (phv00252540.v2.p1)
- CRP_CRHI5 - C-Reactive Protein High Sensitivity (phv00252467.v2.p1)
- CRP_CRPC5 - C-reactive protein, High Sensitivity, Comprehensive (phv00252468.v2.p1)
- CRP_CRPHS - C-Reactive Protein High Sensitivity (phv00252466.v2.p1)
- EKG_Rate - Heart Rate (phv00252549.v2.p1)
- EKG_Rhythm - Heart Rhythm (phv00252550.v2.p1)
- Estradiol_ESTD1 - Estradiol, Serum (phv00252445.v2.p1)
- Estradiol_ESTD2 - Estradiol, Serum (phv00417344.v1.p1)
- Estradiol_ESTS - Estradiol, Serum (phv00252444.v2.p1)
- Exam_BP1_Diastolic - Diastolic blood pressure, 1st measure (phv00252568.v2.p1)
- Exam_BP1_Systolic - Systolic blood pressure, 1st measure (phv00252567.v2.p1)
- Exam_BP2_Diastolic - Diastolic blood pressure, 2nd measure (phv00252570.v2.p1)
- Exam_BP2_Systolic - Systolic blood pressure, 2nd measure (phv00252569.v2.p1)
- Exam_Heart_rate1_bpm - Heart rate, 1st measure (phv00252565.v2.p1)
- Exam_Heart_rate2_bpm - Heart rate, 2nd measure (phv00252566.v2.p1)
- FactorVII_FVII - Factor VII (phv00252463.v2.p1)
- Lipid_CHOL - Cholesterol (phv00252473.v2.p1)
- Lipid_CHOL5 - Cholesterol (phv00252474.v2.p1)
- Lipid_HDLC - HDL Cholesterol (phv00252477.v2.p1)
- Lipid_HDLC5 - HDL Cholesterol (phv00252478.v2.p1)
- Lipid_LDCA4 - LDL Cholest., Direct (phv00252480.v2.p1)
- Lipid_LDCA5 - LDL Cholesterol-Calculated (phv00252481.v2.p1)
- Lipid_LDLCD - LDL Cholest., Direct (phv00252479.v2.p1)
- Lipid_TRIG - Triglycerides (phv00252475.v2.p1)
- Lipid_TRIG5 - Triglycerides (phv00252476.v2.p1)
- PR_Interval - PR Interval (phv00252554.v2.p1)
- QRSD_Interval - QRSD Interval (phv00252551.v2.p1)
- QT_Interval - QT Interval (phv00252552.v2.p1)
- QTC_Interval - QTC Interval (phv00252553.v2.p1)
Demographics (2)
- Age at Enrollment - Age at enrollment (phv00252430.v2.p1)
- sex - Self-reported sex of subject (phv00252431.v2.p1)
Imaging (1)
- CT_Ca_AJ130_score - Coronary calcium score according to the method of PMID 2407762 (phv00252548.v2.p1)
Medications (5)
- AntiHypertensv_Bblocker - Beta blocker medication use (phv00252590.v2.p1)
- AntiHypertensv_NonBblocker - Non-beta blocker antihypertensive medication use (phv00252591.v2.p1)
- Aspirin - Aspirin use (phv00252595.v2.p1)
- Lipids_Statins - Statin-class lipid lowering drug use (phv00252592.v2.p1)
- OralEstrogen - Oral estrogen supplement use (phv00252596.v2.p1)
Race and Ethnicity (1)
- race - Self-reported race of subject (phv00252432.v2.p1)
Other (103)
- ANALYTE_TYPE - Analyte Type (phv00252599.v3.p1)
- BODY_SITE - Body site where sample was collected (phv00252598.v3.p1)
- Chem20_CA - Calcium (phv00252486.v2.p1)
- Chem20_CA05 - Calcium (phv00252487.v2.p1)
- Chem20_CL - Chloride (phv00252496.v2.p1)
- Chem20_CL5 - Chloride (phv00252497.v2.p1)
- Chem20_CO2 - Carbon Dioxide, Total (phv00252498.v2.p1)
- Chem20_CO25 - Carbon Dioxide, Total (phv00252499.v2.p1)
- Chem20_K - Potassium (phv00252494.v2.p1)
- Chem20_K5 - Potassium (phv00252495.v2.p1)
- Chem20_MG - Magnesium (phv00252488.v2.p1)
- Chem20_MG05 - Magnesium (phv00252489.v2.p1)
- Chem20_NA - Sodium (phv00252492.v2.p1)
- Chem20_NA5 - Sodium (phv00252493.v2.p1)
- Chem20_PHO05 - Phosphorus, Inorganic (phv00252491.v2.p1)
- Chem20_PHOSPH - Phosphorus, Inorganic (phv00252490.v2.p1)
- CONSENT - Consent group as determined by DAC (phv00252425.v2.p1)
- Echo_AorticRoot - Aortic Root Diameter (phv00252577.v2.p1)
- Echo_AscendingAo - Ascending Aorta Diameter (phv00252578.v2.p1)
- Echo_AVPeakVelocity - AV Peak Velocity (phv00252585.v2.p1)
- Echo_EARatio - Mitral E to A Ratio (phv00252586.v2.p1)
- Echo_EjectionFractionSIM - LV Ejection Fraction SIM (phv00252583.v2.p1)
- Echo_EjectionFractionVisual - Visual Estimated LV Ejection Fraction (phv00252582.v2.p1)
- Echo_EstRAPressure - RA Pressure (Entered Value) (phv00252587.v2.p1)
- Echo_EstRVSP - Estimated RVSP (phv00252589.v2.p1)
- Echo_IVC - IVC Diamenter Expiration (phv00252576.v2.p1)
- Echo_LA2D - LA Systolic Diameter LX (phv00252579.v2.p1)
- Echo_LAArea - LA Systolic Area 4C (phv00252580.v2.p1)
- Echo_LVDiastolic - LV Diastolic Diameter PLAX (phv00252573.v2.p1)
- Echo_LVMass - LV Mass (calculated) (phv00252575.v2.p1)
- Echo_LVOTPeakVelocity - LVOT Peak Velocity (phv00252584.v2.p1)
- Echo_LVSystolic - LV Systolic Diameter PLAX (phv00252574.v2.p1)
- Echo_PosteriorWall - LVPW Diastolic Thickness (phv00252572.v2.p1)
- Echo_RAArea - RA Area (phv00252581.v2.p1)
- Echo_Septum - IVS Diastolic Thickness (phv00252571.v2.p1)
- Echo_TRPeakVelocity - TR Peak Velocity (phv00252588.v2.p1)
- ethnicity - Self-reported ethnicity of subject (phv00252433.v2.p1)
- Fibrinogen_FIBG - Fibrinogen(Automated) (phv00252462.v2.p1)
- HbA1C_A1C - Hgb A1C (phv00252464.v2.p1)
- HbA1C_A1CA - Hgb A1C (phv00252465.v2.p1)
- Homocys_HCYS1 - Homocysteine,Total,Plasma (phv00252435.v2.p1)
- Homocys_HCYSP - Homocysteine,Total,Plasma (phv00252434.v2.p1)
- I:40_Axis - I:40 Axis (phv00252558.v2.p1)
- IGFI_IGFI - Insulin-Like Growth Factor-1 (phv00252541.v2.p1)
- IGFI_IGFI_SOMC3 - Insulin-Like Growth Factor-1 (phv00417352.v1.p1)
- Insulin_INSU1 - Insulin (phv00252438.v2.p1)
- Insulin_INSULmcU - Insulin (phv00252437.v2.p1)
- Insulin_INSULuunit - Insulin (phv00252436.v2.p1)
- Lipids_NatSupplements - Any natural substance used to lower lipids (phv00252594.v2.p1)
- Lipids_NicotinicAcid - Nicotinic acid use (phv00252593.v2.p1)
- Lipopro_ALPHA - Lipoprotein Alpha (phv00252448.v2.p1)
- Lipopro_BETA - Lipoprotein Beta (phv00252450.v2.p1)
- Lipopro_CHYLO - Lipoprotein Chylomicrons (phv00252451.v2.p1)
- Lipopro_HDL_Particle - HDL Particle Number (phv00417346.v1.p1)
- Lipopro_HDL_Size - HDL Size (phv00417347.v1.p1)
- Lipopro_LDL_Particle - LDL Particle Number (phv00417348.v1.p1)
- Lipopro_LDL_Size - LDL Size (phv00417349.v1.p1)
- Lipopro_PREBETA - Lipoprotein Pre-Beta (phv00252449.v2.p1)
- Lipopro_VLDL_Particle - VLDL Particle Number (phv00417350.v1.p1)
- Lipopro_VLDL_Size - VLDL Size (phv00417351.v1.p1)
- Microalb_UALB - Microalbumin, Urine (phv00252522.v2.p1)
- P_Axis - P Axis (phv00252555.v2.p1)
- ProBNP_PBNP - Pro Brain Natriuretic Peptide (phv00252546.v2.p1)
- ProBNP_PBNP5 - Pro Brain Natriuretic Peptide (phv00252547.v2.p1)
- Progest_PGSN - Progesterone, Serum (phv00252446.v2.p1)
- Progest_PGSN2 - Progesterone, Serum (phv00252447.v2.p1)
- Progest_PGSN3 - Progesterone, Serum (phv00417345.v1.p1)
- QRS_Axis - QRS Axis (phv00252556.v2.p1)
- SAMPLE_ID - De-identified Sample ID (phv00252597.v3.p1)
- SAMPLE_ID - Sample ID (phv00252427.v3.p1)
- SEQUENCING_CENTER - Name of the center which conducted sequencing (phv00252600.v3.p1)
- SEQUENCING_TYPE - Type of sequencing done on sample (phv00491630.v1.p1)
- ST_Axis - ST Axis (phv00252560.v2.p1)
- SUBJECT_ID - De-identified Subject ID (phv00252429.v2.p1)
- SUBJECT_ID - Subject ID (phv00252424.v2.p1)
- SUBJECT_ID - Subject ID (phv00252426.v3.p1)
- T_Wave_Axis - T Wave Axis (phv00252557.v2.p1)
- T:40_Axis - T:40 Axis (phv00252559.v2.p1)
- Testost_TSTT - Testosterone, Total (phv00252545.v2.p1)
- Thyroid_TSH - TSH (Thyroid Stim Horm) (phv00252469.v2.p1)
- Thyroid_TSHI5 - Thyroid Stimulating Hormone (phv00252470.v2.p1)
- Thyroxine_FT4 - FT4 (Free Thyroxine) (phv00252471.v2.p1)
- Thyroxine_FT4I5 - FT4 (Free Thyroxine) (phv00252472.v2.p1)
- Troponin_I_TROP5 - Troponin I (phv00417353.v1.p1)
- TroponinI_TROP4 - Troponin I (phv00252544.v2.p1)
- TroponinT_TPNT - Troponin T (phv00252542.v2.p1)
- TroponinT_TPNT2 - Troponin T (phv00252543.v2.p1)
- Urine_APPEAR - Appearance (phv00252525.v2.p1)
- Urine_COLOR - Color (phv00252524.v2.p1)
- Urine_GLU - Qualitative Glucose (phv00252528.v2.p1)
- Urine_HB - Blood (phv00252531.v2.p1)
- Urine_KETONES - Ketones (phv00252529.v2.p1)
- Urine_LEUKEST - Leukocytes (phv00252532.v2.p1)
- Urine_MUCOS - Mucus (phv00252534.v2.p1)
- Urine_NITRITE - Nitrite (phv00252533.v2.p1)
- Urine_PH - PH (phv00252527.v2.p1)
- Urine_PROT - Qualitative Protein (phv00252523.v2.p1)
- Urine_RBC - Red blood cell count (phv00252535.v2.p1)
- Urine_RENALEP - Renal Epithelial (phv00252538.v2.p1)
- Urine_SPGRAV - Specific Gravity (phv00252526.v2.p1)
- Urine_SQUAEP - Squamous Cells (phv00252537.v2.p1)
- Urine_UROBILI - Urobilinogen (phv00252530.v2.p1)
- Urine_WBC - White blood cell count (phv00252536.v2.p1)