NHLBI TOPMed: The Genetic Epidemiology of Asthma in Costa Rica

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Anthropometry (3)

bmi - BMI (phv00267373.v5.p1)
height - Height in cm (phv00267371.v5.p1)
weight - Weight in kg (phv00267372.v5.p1)

Demographics (6)

age - Subject age at time of administering questionnaire (phv00258650.v5.p1)
Age_at_collection - Subject age at time of primary biosample collection (phv00537779.v1.p1)
Age_at_collection - Subject age at time of primary biosample collection (phv00537761.v1.p1)
gender - Gender of participant (phv00258649.v5.p1)
SEX - Sex of subject (phv00258643.v4.p1)
SEX - Gender of subject (phv00493779.v2.p1)

Disease Events (1)

asthma - Subject has asthma (phv00258652.v5.p1)

Race and Ethnicity (1)

race - Race of participant (phv00258651.v5.p1)

Study Administration (1)

CONSENT - Consent group as determined by DAC (phv00258637.v6.p1)

Substance Use (6)

cigsperday - Number of cigarettes smoked per day (phv00267378.v5.p1)
cigsperday_average - Number of cigarettes smoked per day, averaged over all years of smoking (phv00267379.v5.p1)
Current_Smoker - Current smoking status (phv00267375.v5.p1)
ever_Smoker - Ever smoked (phv00267374.v5.p1)
former_Smoker - Former smoking status (phv00267376.v5.p1)
packyrs - Packs of cigarettes smoked per day multiplied by years of cigarette smoking, calculated at specified visit (phv00267377.v5.p1)

Other (60)

Analyte_isolated - Type of analyte isolated from primary biosample or derived material (phv00537783.v1.p1)
Analyte_isolated - Type of analyte isolated from primary biosample or derived material (phv00537765.v1.p1)
Analyte_isolation_lab - Laboratory performing the analyte isolation (phv00537781.v1.p1)
Analyte_isolation_lab - Name of laboratory performing the analyte isolation (phv00537763.v1.p1)
Analyte_isolation_year - Year that analyte was isolated (phv00537784.v1.p1)
Analyte_isolation_year - Year that analyte was isolated (phv00537766.v1.p1)
Analyte_sample_ID - Identifier for analyte isolated from primary biosample (phv00537782.v1.p1)
Analyte_sample_ID - Identifier for analyte isolated from primary biosample (phv00537764.v1.p1)
ANALYTE_TYPE - Analyte to be measured from the submitted sample (phv00537771.v1.p1)
ANALYTE_TYPE - Analyte to be measured from the submitted sample (phv00537753.v1.p1)
ANALYTE_TYPE - Analyte Type (phv00258655.v5.p1)
Assay_lab - Assay lab to which the samples were sent (phv00537776.v1.p1)
Assay_lab - Assay lab to which the samples were sent (phv00537758.v1.p1)
Barcode - Illumina chip Sentrix barcode (phv00537785.v1.p1)
BODY_SITE - Anatomical site at which biosample was taken (phv00537770.v1.p1)
BODY_SITE - Anatomical site at which biosample was taken (phv00537752.v1.p1)
BODY_SITE - Body site where sample was collected (phv00258654.v5.p1)
Collection_year - Year that primary biosample was collected (phv00537780.v1.p1)
Collection_year - Year that primary biosample was collected (phv00537762.v1.p1)
decodeDate - Earliest date shown for 'AutoDecode' action in the .idat 'RunInfo' table. Presumably related to the chip manufacturing date. (phv00537788.v1.p1)
extractDate - Earliest date shown for 'Scan', 'Register' and 'Extract' actions in the .idat 'RunInfo' table. Presumably date when the chip was scanned after hybridization, extension and staining. (phv00537789.v1.p1)
FAMILY_ID - Family ID (phv00258639.v4.p1)
FATHER - Subject ID for Father (phv00258642.v4.p1)
Funding_Source - Project funding source (phv00301401.v4.p1)
HISTOLOGICAL_TYPE - Primary biosample type (phv00537772.v1.p1)
HISTOLOGICAL_TYPE - Primary biosample type (phv00537754.v1.p1)
IS_TUMOR - Tumor status of the sample (phv00537773.v1.p1)
IS_TUMOR - Tumor status of the sample (phv00537755.v1.p1)
IS_TUMOR - Tumor status (phv00258657.v5.p1)
MOTHER - Subject ID for Mother (phv00258641.v4.p1)
MZ_TWIN_ID - Twin ID for monozygotic twins or multiples. A TWINID is not provided for dizygotic twins or multiples (phv00267369.v4.p1)
nSNPsRead - Value reported as 'nSNPsRead' in Illumina .idat file header (phv00537787.v1.p1)
p.0.01 - Fraction of CpG sites which pass a detection p-value threshold of 0.01 (phv00537791.v1.p1)
p.0.05 - Fraction of CpG sites which pass a detection p-value threshold of 0.05 (phv00537790.v1.p1)
Primary_biosample_ID - ID for primary biosample (phv00537777.v1.p1)
Primary_biosample_ID - ID for primary biosample (phv00537759.v1.p1)
Primary_biosample_type - Type of primary biosample (phv00537778.v1.p1)
Primary_biosample_type - Type of primary biosample (phv00537760.v1.p1)
RowCol - Illumina chip assay position (phv00537786.v1.p1)
sample_container_ID - Sample plate for shipping samples to assay center (phv00537769.v1.p1)
sample_container_ID - Sample plate for shipping samples to assay center (phv00537751.v1.p1)
SAMPLE_ID - DNA methylation sample identifier (phv00537767.v1.p1)
SAMPLE_ID - Metabolomics sample identifier (phv00537748.v1.p1)
SAMPLE_ID - Sample ID (phv00258653.v5.p1)
SAMPLE_ID - Sample ID (phv00258646.v6.p1)
Sample_type - Identifier indicating study or control samples (phv00537749.v1.p1)
sample_well - Well of the sample shipment container (phv00537768.v1.p1)
sample_well - Well of the sample shipment container (phv00537750.v1.p1)
SEQUENCING_CENTER - Name of the center which conducted sequencing (phv00301400.v4.p1)
Study_Name - TOPMed-assigned short study name (1:1 with TOPMed phs number) (phv00301403.v4.p1)
SUBJECT_ID - De-identified Subject ID (phv00258648.v5.p1)
SUBJECT_ID - Unique Subject ID (phv00258640.v4.p1)
SUBJECT_ID - Subject ID (phv00258636.v6.p1)
SUBJECT_ID - Subject ID (phv00258645.v6.p1)
TOPMed_Phase - TOPMed Phase (phv00301402.v4.p1)
TOPMed_Project - TOPMed Project that funded sequencing (phv00301404.v4.p1)
UBERON_ID - UBERON ontology identifier for type of primary biosample (phv00537774.v1.p1)
UBERON_ID - UBERON ontology identifier for type of primary biosample (phv00537756.v1.p1)
UBERON_Term - UBERON ontology term for type of primary biosample (phv00537775.v1.p1)
UBERON_Term - UBERON ontology term for type of primary biosample (phv00537757.v1.p1)