FOCI Mayo 2.5M
Ancestry (1)
- ANCESTRY - Intercontinental ancestry as assigned by LAMP. 90 % was used for European, 80% for African and Asian, respectively. The remaining samples were categorized as Other ethnic group. (phv00354227.v1.p1)
Demographics (1)
- REF_AGE - Age at diagnosis (cases) or interview (controls) (phv00354226.v1.p1)
Disease Events (5)
- BEHAVIOR - Tumor behavior (phv00354223.v1.p1)
- GRADE - Tumor grade (phv00354224.v1.p1)
- HISTOLOGY - Tumor histology (phv00354225.v1.p1)
- IS_TUMOR - Tumor status of sample (phv00354234.v1.p1)
- PRIMARY_SITE - Primary cancer site or control status (phv00354222.v1.p1)
Other (8)
- ANALYTE_TYPE - Analyte type (phv00354231.v1.p1)
- BODY_SITE - Body site where sample was collected (phv00354230.v1.p1)
- EUR_GWAS - Indicator if analyzed in European GWAS by FOCI (phv00354228.v1.p1)
- EXCL_WORSEDUP - Indicator for worse duplicates for sample, to be removed from primary analysis (phv00354232.v1.p1)
- EXCLUDE_QC - Indicator for failed QC criterion: call rate less than 95%, extreme heterozygosity (phv00354233.v1.p1)
- FAIL_SEXCHECK - Indicator for failed sex check from plink --sex-check option (i.e. >80% male calls) (phv00431114.v1.p1)
- SAMPLE_ID - De-identified sample ID (phv00354229.v1.p1)
- SUBJECT_ID - De-identified subject ID (phv00354221.v1.p1)