NHLBI TOPMed: Women's Health Initiative (WHI)

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Demographics (4)

  • AGE_AT_COLLECTION - Subject's age at time of primary biosample collection (not available for 2019 assays) (phv00542515.v1.p2)
  • AGE_AT_COLLECTION - Subject's age at time of primary biosample collection (not available for 2019 assays) (phv00535264.v1.p2)
  • AGE_AT_COLLECTION - Subject's age in years at time of tissue collection (phv00542542.v1.p2)
  • SEX - Reported gender of subject (phv00496393.v2.p2)

Other (94)

  • ANALYTE_ISOLATED - Type of analyte material isolated (phv00542556.v1.p2)
  • ANALYTE_ISOLATION_BATCH - Identifier for samples whose DNA was extracted at the same time (phv00542527.v1.p2)
  • ANALYTE_ISOLATION_BATCH - Identifier for samples whose DNA was extracted at the same time (phv00535276.v1.p2)
  • ANALYTE_ISOLATION_BATCH - Batch number of when the analyte was isolated (phv00542557.v1.p2)
  • Analyte_isolation_lab - Lab which performed the analyte isolation (phv00542574.v1.p2)
  • ANALYTE_ISOLATION_LAB - Lab which performed the analyte isolation (phv00542529.v1.p2)
  • ANALYTE_ISOLATION_LAB - Lab which performed the analyte isolation (phv00535278.v1.p2)
  • ANALYTE_ISOLATION_LAB - Identifier for what lab conducted the isolation (phv00542559.v1.p2)
  • ANALYTE_ISOLATION_YEAR - Year in which DNA was extracted from the primary biosample (phv00542528.v1.p2)
  • ANALYTE_ISOLATION_YEAR - Year in which DNA was extracted from the primary biosample (phv00535277.v1.p2)
  • ANALYTE_ISOLATION_YEAR - Identifer of year the analyte was isolated (phv00542558.v1.p2)
  • ANALYTE_SAMPLE_ID - Identifier for analyte isolated from primary biosample (phv00542526.v1.p2)
  • ANALYTE_SAMPLE_ID - Identifier for analyte isolated from primary biosample (phv00535275.v1.p2)
  • ANALYTE_TYPE - Type of analyte to be measured (phv00542530.v1.p2)
  • ANALYTE_TYPE - Type of analyte to be measured (phv00535279.v1.p2)
  • ANALYTE_TYPE - Type of omics assay to be performed, generally one of the following four values: "RNA", "DNA", "protein", or "metabolite" (phv00542546.v1.p2)
  • ANALYTE_TYPE - Type of analyte to be measured (phv00542564.v1.p2)
  • ANALYTE_TYPE - Analyte Type (phv00273616.v4.p2)
  • Assay_batch - Data processing batch (phv00542534.v1.p2)
  • assay_lab - Name of assay lab to which the samples were sent (phv00542569.v1.p2)
  • Barcode - Illumina chip Sentrix barcode (phv00542537.v1.p2)
  • BODY_SITE - Anatomical site at which biosample was taken (phv00542519.v1.p2)
  • BODY_SITE - Anatomical site at which biosample was taken (phv00535268.v1.p2)
  • BODY_SITE - Anatomical site at which biosample was taken, e.g. "arm vein", "lung", "inner oral cavity" (phv00542545.v1.p2)
  • BODY_SITE - Anatomical site at which biosample was taken (phv00542563.v1.p2)
  • BODY_SITE - Body site where sample was collected (phv00273615.v4.p2)
  • Collection_visit - Study visit identifier for when the primary biosample was collected. (phv00542562.v1.p2)
  • COLLECTION_VISIT - Study visit at which the primary biosample was collected (phv00542518.v1.p2)
  • COLLECTION_VISIT - Study visit at which the primary biosample was collected (phv00535267.v1.p2)
  • COLLECTION_VISIT - Study visit when the primary biosample was collected (relevant for longitudianal studies with multiple waves of clinic visits). (phv00542544.v1.p2)
  • COLLECTION_YEAR - Year in which the primary biosample was collected (not available for 2019 assays) (phv00542517.v1.p2)
  • COLLECTION_YEAR - Year in which the primary biosample was collected (not available for 2019 assays) (phv00535266.v1.p2)
  • COLLECTION_YEAR - Year in which primary biosample was collected (informative for storage time) (phv00542543.v1.p2)
  • CONSENT - Consent Group (phv00273610.v3.p2)
  • decodeDate - Earliest date shown for 'AutoDecode' action in the .idat 'RunInfo' table. Presumably related to the chip manufacturing date. (phv00542539.v1.p2)
  • Draw_days - Days since randomization/enrollment to when biosample was taken (phv00542561.v1.p2)
  • extractDate - Earliest date shown for 'Scan', 'Register' and 'Extract' actions in the .idat 'RunInfo' table. Presumably date when the chip was scanned after hybridization, extension and staining. (phv00542540.v1.p2)
  • Funding_Source - Project funding source (phv00396100.v4.p2)
  • HISTOLOGICAL_TYPE - Tissue sub-type or type of cellular or extra-cellular material derived from primary biosample (phv00542522.v1.p2)
  • HISTOLOGICAL_TYPE - Tissue sub-type or type of cellular or extra-cellular material derived from primary biosample (phv00535271.v1.p2)
  • HISTOLOGICAL_TYPE - Cell or tissue subtype derived from the Primary biosample, or if no subfractionation was done, the primary biosample type; e.g. plasma for proteins and metabolites; PBMC, T-cell, or monocyte for RNA; blood buffy coat for DNA (phv00542547.v1.p2)
  • HISTOLOGICAL_TYPE - Tissue sub-type or type of cellular or extra-cellular material derived from primary biosample (phv00542565.v1.p2)
  • IS_TUMOR - Tumor status of the sample (phv00542523.v1.p2)
  • IS_TUMOR - Tumor status of the sample (phv00535272.v1.p2)
  • IS_TUMOR - Tumor status of the sample. For non-cancer studies, all values should be "no". For cancer studies, values should be "yes" or "no". (NCBI Biosample characteristic) (phv00542548.v1.p2)
  • IS_TUMOR - Tumor status of the sample (phv00542566.v1.p2)
  • IS_TUMOR - Tumor status (phv00273617.v4.p2)
  • nSNPsRead - Value reported as 'nSNPsRead' in Illumina .idat file header (phv00542538.v1.p2)
  • OMICS_ASSAY_LAB - Name of assay lab to which the samples were sent (phv00542533.v1.p2)
  • OMICS_ASSAY_LAB - Name of assay lab to which the samples were sent (phv00535282.v1.p2)
  • OMICS_ASSAY_LAB - Name of the omics center to which the samples were sent (phv00542551.v1.p2)
  • p.0.01 - Fraction of CpG sites which pass a detection p-value threshold of 0.01 (phv00542536.v1.p2)
  • p.0.05 - Fraction of CpG sites which pass a detection p-value threshold of 0.05 (phv00542535.v1.p2)
  • Primary_biosample_ID - Identifier for primary biosample (phv00542570.v1.p2)
  • PRIMARY_BIOSAMPLE_ID - Identifier for primary biosample (phv00542524.v1.p2)
  • PRIMARY_BIOSAMPLE_ID - Identifier for primary biosample (phv00535273.v1.p2)
  • PRIMARY_BIOSAMPLE_ID - De-identified biorepository ID for the tissue sample that was collected. Relevant when multiple biosamples may have been taken from the same subject at different times; also relevant when multiple analytes were extracted from the same primary biosample (e.g. blood draw); identifier must be anonymized (de-identified) (phv00542552.v1.p2)
  • Primary_biosample_type - Type of primary biosample (phv00542571.v1.p2)
  • PRIMARY_BIOSAMPLE_TYPE - Type of primary biosample (phv00542525.v1.p2)
  • PRIMARY_BIOSAMPLE_TYPE - Type of primary biosample (phv00535274.v1.p2)
  • PRIMARY_BIOSAMPLE_TYPE - Type of primary biosample, e.g. "venous blood", "lung epithelium"; be as specific as possible (phv00542553.v1.p2)
  • sample_box_ID - Identifier for the sample shipment box (phv00542572.v1.p2)
  • SAMPLE_CONTAINER_ID - Identifier for the sample shipment plate (phv00542531.v1.p2)
  • SAMPLE_CONTAINER_ID - Identifier for the sample shipment plate (phv00535280.v1.p2)
  • SAMPLE_CONTAINER_ID - Identifier for sample plate, box or other container used for shipping samples to the assay center (phv00542554.v1.p2)
  • SAMPLE_ID - DNA methylation sample identifier (phv00542514.v1.p2)
  • SAMPLE_ID - RNAseq sample identifier (phv00535263.v1.p2)
  • SAMPLE_ID - TOPMed identifier for each sample aliquot sent to the assay center. MUST use TOPMed identifiers - TOR (RNA), TOP (protein), TOM (metabolite), TOE (DNA for methylation assay) (phv00542541.v1.p2)
  • SAMPLE_ID - Identifier for aliquot of material or isolated analyte from which assay was performed (phv00542560.v1.p2)
  • SAMPLE_ID - De-identified Sample ID (phv00273614.v4.p2)
  • SAMPLE_ID - De-identified Sample ID (phv00273612.v4.p2)
  • sample_row_column_ID - Identifier for the row and column of the sample shipment box (phv00542573.v1.p2)
  • SAMPLE_WELL_ID - Identifier for the well within the sample shipment plate (phv00542532.v1.p2)
  • SAMPLE_WELL_ID - Identifier for the well within the sample shipment plate (phv00535281.v1.p2)
  • SAMPLE_WELL_ID - Identifier for well, tube, or other subdivision of the sample shipping container (phv00542555.v1.p2)
  • SEQUENCING_CENTER - Name of the center which conducted sequencing (phv00273619.v4.p2)
  • SOURCE_SUBJECT_ID - Subject ID used in the SUBJECT_SOURCE repository (phv00396099.v3.p2)
  • Study_Name - TOPMed-assigned short study name (1:1 with TOPMed phs number) (phv00396103.v4.p2)
  • Subject_fasting_hours - Number of hours subject fasted prior to when biosample was taken (phv00542575.v1.p2)
  • SUBJECT_FASTING_HOURS - Number of hours subject fasted prior to when biosample was taken (phv00542516.v1.p2)
  • SUBJECT_FASTING_HOURS - Number of hours subject fasted prior to when biosample was taken (phv00535265.v1.p2)
  • SUBJECT_ID - WHI dbGaP Subject ID (phv00273609.v3.p2)
  • SUBJECT_ID - De-identified Subject ID (phv00273611.v4.p2)
  • SUBJECT_SOURCE - Repository name for dbGaP study also containing this individual (phv00396098.v3.p2)
  • TOPMed_Phase - TOPMed Phase (phv00396101.v4.p2)
  • TOPMed_Project - TOPMed Project that funded sequencing (phv00396102.v4.p2)
  • UBERON_ID - UBERON ontology identifier for Type of primary biosample (phv00542520.v1.p2)
  • UBERON_ID - UBERON ontology identifier for Type of primary biosample (phv00535269.v1.p2)
  • UBERON_ID - UBERON ontology identifier for type of primary biosample; value is "0013756" for venous blood, https://www.ebi.ac.uk/ols/ontologies/uberon for others (phv00542549.v1.p2)
  • UBERON_ID - UBERON ontology identifier for Type of primary biosample (phv00542567.v1.p2)
  • UBERON_Term - UBERON ontology term for type of primary biosample (phv00542568.v1.p2)
  • UBERON_TERM - UBERON ontology term for type of primary biosample (phv00542521.v1.p2)
  • UBERON_TERM - UBERON ontology term for type of primary biosample (phv00535270.v1.p2)
  • UBERON_TERM - UBERON ontology term for type of primary biosample, e.g. "venous blood", https://www.ebi.ac.uk/ols/ontologies/uberon for others (phv00542550.v1.p2)