NextGen Consortium: The iPSCORE (iPSC Collection for Omic Research) Resource for Studying the Impact of Genetic Variation on Molecular and Physiological Phenotypes - Whole Genome Sequence
Ancestry (1)
- GENETICALLY_SIMILAR_POPULATION_GROUP - Most similar super population group as estimated by comparing the individuals SNPs to the 1KG dataset by PCA. This value is the super population values from 1KG, not eg "Asian" (phv00292769.v1.p1)
Demographics (3)
- AGE - Subject age at enrollment (phv00292766.v1.p1)
- SEX - Subject sex (phv00292765.v1.p1)
- SEX - Subject sex (phv00292757.v1.p1)
Race and Ethnicity (2)
- RACE_ETHNICITY_GROUPING - Race/ethnicity category as grouped by researcher (phv00292768.v1.p1)
- REPORTED_RACE_ETHNICITY - Reported race/ethnicity of participant as recorded by fill in the blank (phv00292767.v1.p1)
Other (31)
- ANALYTE_TYPE - Analyte Type (phv00292783.v3.p1)
- CLONE - Original clone number from which cell line was expanded (phv00395950.v2.p1)
- CONSENT - CONSENT (phv00292752.v1.p1)
- DISEASE_ONTOLOGY_CODE - Disease ontology (DO) code for primary heart diagnoses as described http://www.disease-ontology.org/ and obtained through http://www.malacards.org/ (phv00292774.v1.p1)
- FAMILY_ID - Family ID (phv00292753.v1.p1)
- FATHER_SUBJECT_ID - Father's SUBJECT_ID (phv00292755.v1.p1)
- HEART_DISEASE_CATEGORY - Classification of primary heart diagnoses for individuals recruited through the UCSD Sulpizio Cardiovascular Center (phv00292770.v1.p1)
- HEART_DISEASE_COMMENT - Comment on heart diagnoses for individuals recruited through the UCSD Sulpizio Cardiovascular Center (phv00292773.v1.p1)
- HISTOLOGICAL_TYPE - Cell or tissue type or subtype of sample (phv00292780.v3.p1)
- HUMAN_CORE_EXOME_ARRAY - Indicator for whether subject has HumanCoreExome12v1 or HumanCoreExome24v1 array data (phv00542369.v1.p1)
- iPSCORE_ID - De-identified Subject ID (phv00292764.v1.p1)
- IS_TUMOR - Tumor status (phv00292781.v3.p1)
- MEGA_V2_ARRAY - Indicator for whether subject has MEGA V2 array data (phv00542370.v1.p1)
- MOTHER_SUBJECT_ID - Mother's SUBJECT_ID (phv00292756.v1.p1)
- MZorDZ - An indicator when an individual is a monozygotic or dizygotic twin (phv00292759.v1.p1)
- OTHER_HEART_DIAGNOSES - Other (non-primary) heart diagnoses for individuals recruited through the UCSD Sulpizio Cardiovascular Center (phv00292772.v1.p1)
- PASSAGE - Passage number of cell line which was analysed (phv00395951.v2.p1)
- PRIMARY_HEART_DIAGNOSES - Primary heart diagnosis for individuals recruited through the UCSD Sulpizio Cardiovascular Center (phv00292771.v1.p1)
- SAMPLE_ID - De-identified unique Sample ID (phv00292779.v3.p1)
- SAMPLE_ID - Sample ID (phv00292761.v3.p1)
- SAMPLE_SOURCE - Organisation providing original sample (phv00292784.v3.p1)
- SEQUENCING_CENTER - Name of the center which conducted sequencing (phv00292785.v3.p1)
- SUBJECT_ID - De-identified unique Subject ID with the format of either a universally unique identifier (UUID) for subjects with data or the iPSCORE_ID for those that are only in pedigree file (phv00292763.v1.p1)
- SUBJECT_ID - SUBJECT_ID (phv00292754.v1.p1)
- SUBJECT_ID - SUBJECT_ID (phv00292751.v1.p1)
- SUBJECT_ID - Subject ID (phv00292760.v3.p1)
- TWIN_ID - Number indicating pair of monozygotic twins (phv00292758.v1.p1)
- UCSD_IPSC_CLONE_ID - UUID Identifier for iPSC clone. If the cell is an iPSC-derived cell type, this indicates the source clone. (phv00395952.v2.p1)
- UCSD_SOURCE_TISSUE_ID - UUID Identifier for tissue sample source. Samples with the same tissue ID were sequenced twice. (phv00292782.v3.p1)
- WHOLE_GENOME_SEQUENCING - Indicator for whether subject has whole genome sequence data (phv00542368.v1.p1)
- WICELL_ID - WiCell identifier assigned to iPSC line archived at WiCell Research Institute, Wisconsin, USA (phv00395953.v2.p1)