Prematurity, Respiratory Outcomes, Immune System, and Microbiome Study (PRISM)

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Anthropometry (1)

motherbmi - BMI of the mother at the time of delivery (phv00417807.v1.p2)

Demographics (6)

last_dol_ett - Last DOL on ETT for GT 2 days in a row (phv00417801.v1.p2)
nasalCGA - Postmenstrual Age (weeks) at time of nasal swab sampling (phv00313020.v3.p2)
rectalCGA - Postmenstrual Age (weeks) at time of rectal swab sampling (phv00313022.v3.p2)
sex_screen - Subject sex (phv00313014.v2.p2)
SUBJECT_ID - Unique Identifier (phv00313011.v2.p2)
SUBJECT_ID - Subject ID (phv00313002.v3.p2)

Diet (2)

fup1_nonmilk - Does baby eat any non-milk foods (phv00417891.v1.p2)
fup1_nonmilk_log - What non-milk foods does baby eat (phv00417892.v1.p2)

Disease Events (3)

qsallna_2 - Allergies within the siblings (phv00417805.v1.p2)
qsastna_2 - Asthma within the siblings (phv00417804.v1.p2)
qseczna_2 - Eczema within the siblings (phv00417806.v1.p2)

General Health (2)

huadmit - Number hospital admissions (phv00417860.v1.p2)
huicu - Admitted to intensive care (phv00417862.v1.p2)

Imaging (28)

days_cpap - Days on cpap (phv00417795.v1.p2)
days_hf - Days on high frequency ventilation (phv00417794.v1.p2)
days_mv - Days on mechanical ventilation (phv00417793.v1.p2)
days_nc - Days on nasal cannula (phv00417798.v1.p2)
days_nc_gt1 - Days on nasal cannula gt 1 lmp (phv00417796.v1.p2)
days_o2 - Days on oxygen (phv00417792.v1.p2)
days_rs - Days on any respiratory support (phv00417797.v1.p2)
FinalStatus - Bronchopulmonary dysplasia status (phv00417788.v1.p2)
max_map - Maximum mean airway pressure (phv00417799.v1.p2)
PRD_1yr - Persistent Repiratory disease after one year (phv00417789.v1.p2)
qscpaphome - CPAP or BIPAP (phv00417880.v1.p2)
qsgastro - Feeding tube in stomach (phv00417884.v1.p2)
qsmonitor - Breathing and Heart Rate Monitor (phv00417878.v1.p2)
qsngtb - Feeding tube in nose (phv00417883.v1.p2)
qsoxygen_fup - Oxygen Therapy (phv00417879.v1.p2)
qstrachfup - Trach or breathing tube (phv00417882.v1.p2)
qsventhome - Ventilator (phv00417881.v1.p2)
RMSS - Derived respiratory severity score (phv00417810.v1.p2)
ssacold - Occurred apart from colds (phv00417870.v1.p2)
sscday - Coughing during daytime (phv00417875.v1.p2)
sscnight - Coughing during nighttime (phv00417876.v1.p2)
sscold - Occurred with colds (phv00417869.v1.p2)
sscough - Cough without cold (phv00417874.v1.p2)
ssdxw - Diagnosed with wheezing by doctor (phv00417873.v1.p2)
sshcold - Number of colds (phv00417877.v1.p2)
sswday - Chest wheezy during daytime (phv00417871.v1.p2)
sswheeze - Has baby chest sounded wheezy or whistling (phv00417868.v1.p2)
sswnight - Chest wheezy during nighttime (phv00417872.v1.p2)

Race and Ethnicity (2)

ethnic - Subject ethnicity (phv00313015.v2.p2)
race - Subject race (phv00313016.v3.p2)

Reproductive Health (10)

birth_season - Season of birth (phv00417809.v1.p2)
BirthMode - Mode of Delivery (phv00313205.v2.p2)
dis_age - Gestational age at discharge (phv00417802.v1.p2)
dyfeedhome1 - For how many months did baby receive breast milk for more than half of feedings (phv00417890.v1.p2)
dymilkhome1 - Did baby receive breast milk since last visit (phv00417889.v1.p2)
fup1_bmilk - Is baby receiving breast milk (phv00417887.v1.p2)
fup1_bmilk_excl - Is baby receiving breast milk exclusively (phv00417888.v1.p2)
gaBirth - Gestational age at birth (phv00313017.v2.p2)
last_pma_ett - Last PMA on ETT for GT 2 days in a row (phv00417800.v1.p2)
rhchorio - Was there any chlorioamnionitis (phv00417808.v1.p2)

Study Administration (1)

Cohort - Label indicating group of subject (phv00313012.v2.p2)

Other (80)

Adeno - Presence of Adenovirus within the sample (phv00417814.v1.p2)
Adeno classification - Hardcoded to virus, needed for analysis (phv00417815.v1.p2)
ANALYTE_TYPE - Analyte Type (phv00313026.v3.p2)
auc_o2exposure_14d - Oxygen auc at 14 days (phv00417791.v1.p2)
auc_o2exposure_7d - Oxygen auc at 7 days (phv00417790.v1.p2)
AUC14d - OxygenAUC for first 14d of life (phv00417811.v1.p2)
AUCwk2_adj - Difference between FIO2 week 2 and FIO2 week 1 (phv00417812.v1.p2)
B. pert - Presence of Bordetella pertussis within the sample (phv00417818.v1.p2)
B. pert classification - Hardcoded to bacteria needed for analysis (phv00417819.v1.p2)
Boca - Presence of Bocavirus within the sample (phv00417816.v1.p2)
Boca classification - Hardcoded to virus, needed for analysis (phv00417817.v1.p2)
BODY_SITE - Body site where sample was collected (phv00313024.v3.p2)
C. pneu - Presence of Chlamydophila pneumoniae within the sample (phv00417828.v1.p2)
C. pneu classification - Hardcoded to bacteria needed for analysis (phv00417829.v1.p2)
CONSENT - Consent group as determined by DAC (phv00313003.v3.p2)
Corona 1 - Presence of Coronavirus 1 within the sample (phv00417820.v1.p2)
Corona 1 classification - Hardcoded to virus, needed for analysis (phv00417821.v1.p2)
Corona 2 - Presence of Coronavirus 2 within the sample (phv00417822.v1.p2)
Corona 2 classification - Hardcoded to virus, needed for analysis (phv00417823.v1.p2)
Corona 3 - Presence of Coronavirus 3 within the sample (phv00417824.v1.p2)
Corona 3 classification - Hardcoded to virus, needed for analysis (phv00417825.v1.p2)
Corona 4 - Presence of Coronavirus 4 within the sample (phv00417826.v1.p2)
Corona 4 classification - Hardcoded to virus, needed for analysis (phv00417827.v1.p2)
Entero XL - Presence of Enterobacteriaceae within the sample (phv00417830.v1.p2)
Entero XL classification - Hardcoded to bacteria needed for analysis (phv00417831.v1.p2)
Flu A - Presence of Flu A within the sample (phv00417832.v1.p2)
Flu A classification - Hardcoded to virus, needed for analysis (phv00417833.v1.p2)
Flu B - Presence of Flu B within the sample (phv00417834.v1.p2)
Flu B classification - Hardcoded to virus, needed for analysis (phv00417835.v1.p2)
H. influ - Presence of Haemophilus influenzae within the sample (phv00417836.v1.p2)
H. influ classification - Hardcoded to bacteria needed for analysis (phv00417837.v1.p2)
HISTOLOGICAL_TYPE - Cell or tissue type or subtype of sample (phv00313028.v3.p2)
hMPV - Presence of Human metapneumovirus within the sample (phv00417838.v1.p2)
hMPV classification - Hardcoded to virus, needed for analysis (phv00417839.v1.p2)
huervt - Sick visits (phv00417864.v1.p2)
huervtunk - Sick visits unknown (phv00417865.v1.p2)
huerwz - Sick visits due to wheezing or breathing problems (phv00417866.v1.p2)
huerwzunk - Sick visits due to wheezing unk (phv00417867.v1.p2)
hursv - Admissions due to RSV (phv00417863.v1.p2)
huwheeze - Due to wheezing or breathing problems (phv00417861.v1.p2)
IS_TUMOR - Tumor status (phv00313027.v3.p2)
M. hom - Presence of Mycoplasma hominis within the sample (phv00417840.v1.p2)
M. hom classification - Hardcoded to bacteria needed for analysis (phv00417841.v1.p2)
M. pneu - Presence of Mycoplasma pneumoniae within the sample (phv00417842.v1.p2)
M. pneu classification - Hardcoded to bacteria needed for analysis (phv00417843.v1.p2)
Moraxella - Presence of Moraxella within the sample (phv00420985.v1.p2)
Moraxella classification - Hardcoded to bacteria needed for analysis (phv00420984.v1.p2)
nasalDol - Day of life of the nasal test (phv00313021.v3.p2)
OTU_ReadCount - Number of reads measured in the sample (phv00313025.v3.p2)
OTU_ReadCount2 - Number of reads measured in the sample within the PRISM2 study (phv00483108.v1.p2)
Parecho - Presence of parechovirus within the sample (phv00417844.v1.p2)
Parecho classification - Hardcoded to virus, needed for analysis (phv00417845.v1.p2)
PIV 1 - Presence of PIV 1 within the sample (phv00417846.v1.p2)
PIV 1 classification - Hardcoded to virus, needed for analysis (phv00417847.v1.p2)
PIV 2 - Presence of PIV 2 within the sample (phv00417848.v1.p2)
PIV 2 classification - Hardcoded to virus, needed for analysis (phv00417849.v1.p2)
PIV 3 - Presence of PIV 3 within the sample (phv00417850.v1.p2)
PIV 3 classification - Hardcoded to virus, needed for analysis (phv00417851.v1.p2)
qothtechs - Describe other equipment (phv00417886.v1.p2)
qsexpandc - Exposure to furry animals in the home (phv00417803.v1.p2)
qsoths - Other equipment used (phv00417885.v1.p2)
rectalDol - Day of life of the rectal test (phv00313023.v3.p2)
Region_16S - Region of bacteria being sequenced (phv00417813.v1.p2)
Rhino - Presence of Rhinovirus within the sample (phv00417852.v1.p2)
Rhino classification - Hardcoded to bacteria needed for analysis (phv00417853.v1.p2)
RSV - Presence of RSV within the sample (phv00417854.v1.p2)
RSV classification - Hardcoded to virus, needed for analysis (phv00417855.v1.p2)
S. pneu - Presence of Streptococcus pneumoniae within the sample (phv00417856.v1.p2)
S. pneu classification - Hardcoded to virus, needed for analysis (phv00417857.v1.p2)
SAMPLE_ID - De-identified Sample ID (phv00313018.v3.p2)
SAMPLE_ID - Sample ID (phv00313007.v3.p2)
SOURCE_SUBBJ_ID2 - Source ID within existing dbGaP study (phv00347492.v2.p2)
SOURCE_SUBJECT_ID - Subject ID used in the Source Repository (phv00313005.v3.p2)
STUDY - Study ID of the Source Repository (phv00347490.v2.p2)
SUBJ_SOURCE2 - DbGaP study in which the subject is already declared (phv00347491.v2.p2)
SUBJECT_ID - Subject ID (phv00313006.v3.p2)
SUBJECT_SOURCE - Source repository where subjects originate (phv00313004.v3.p2)
Urea - Presence of Ureaplasma within the sample (phv00417858.v1.p2)
Urea classification - Hardcoded to bacteria needed for analysis (phv00417859.v1.p2)
Visit - Label describing the purpose of the visit (phv00313019.v3.p2)