Structure and Diversity of Urinary Cell-Free DNA Informative of Host-Pathogen Interactions in Human Urinary Tract Infection
Biomarkers (2)
- ANALYTE_TYPE - Analyte Type (phv00417786.v3.p1)
- SAMPLE_TYPE - Describes fluid from which DNA was extracted (phv00426930.v2.p1)
Demographics (5)
- COLLECTION_DAY - Day after transplantation on which urine sample was collected (negative numbers refer to days before transplant) (phv00378370.v4.p1)
- DONOR_SEX - Sex of patient donating kidney in the case of renal transplant (phv00378365.v4.p1)
- FETAL_SEX - Sex of fetus in the case of pregnancy (phv00426928.v2.p1)
- RECIPIENT_SEX - Sex of patient receiving kidney in the case of renal transplant (phv00378366.v4.p1)
- SEX - Patient sex (phv00508396.v1.p1)
Other (23)
- BACTERIAL_CULTURE - Was a bacterial culture performed on the sample? (phv00378373.v4.p1)
- BK_QPCR - Was a qPCR assay for BK polyomavirus genes performed? (phv00378375.v4.p1)
- BK_QPCR_COPYNUMBER - Number of BK polyomavirus fragments determined by qPCR assay. (phv00378376.v4.p1)
- BODY_SITE - Body site where sample was collected (phv00417785.v3.p1)
- CLINICAL_DIAGNOSIS - Narrow sample cateogy based on infection diagnosis of clinician (phv00378368.v4.p1)
- COLLECTION_METHOD - Method by which clinicians collected patient sample (phv00378372.v4.p1)
- CONDITION - Condition of the subject (phv00537278.v1.p1)
- CONSENT - Conseny group as determined by DAC (phv00378357.v4.p1)
- IBIS_BACTERIAL_USED - Was IBIS platform used to identify bacteria (phv00426931.v2.p1)
- IDENTIFICATION - Bacteria determined >10,000 CFU in urine culture. (phv00378374.v4.p1)
- IS_TUMOR - Tumor status (phv00417787.v3.p1)
- MeSH_PHENOTYPE - Broad sample category based on infection status (phv00378367.v4.p1)
- SAMPLE_ID - De-identified Sample ID (phv00378369.v4.p1)
- SAMPLE_ID - Sample ID (phv00378361.v4.p1)
- SEQUENCING_CENTER - Location where sequencing was performed (phv00378377.v4.p1)
- SEQUENCING_PLATFORM - Brand and model of next-generation sequencing platform (phv00378378.v4.p1)
- SEQUENCING_READ_LENGTHS - Description of length of raw-data reads (phv00378379.v4.p1)
- STATUS - Infection status (phv00378371.v4.p1)
- SUBJECT_ID - De-identified patient identification number (phv00378364.v4.p1)
- SUBJECT_ID - Patient Identification number (phv00378356.v4.p1)
- SUBJECT_ID - Subject ID (phv00378360.v4.p1)
- SUBJECT_SOURCE - Source repository where subjects originate (phv00378358.v4.p1)
- SUBJECT_TYPE - Characterizes subject (phv00426929.v2.p1)