NHLBI TOPMed: Coronary Artery Risk Development in Young Adults (CARDIA)
Demographics (5)
- Age_at_collection - Subject age at time of primary biosample collection (phv00531282.v2.p3)
- Age_at_collection - Subject's age in years at time of tissue collection (phv00541491.v1.p3)
- Age_at_collection - Subject's age in years at time of tissue collection (phv00541482.v1.p3)
- Age_at_collection - Subject's age in years at time of tissue collection (phv00541502.v1.p3)
- SEX - Biological sex (phv00531203.v2.p3)
Study Administration (1)
- fasting - Fasting status (phv00541499.v1.p3)
Other (65)
- Analyte_isolated - Type of analyte isolated from primary biosample or derived material (phv00531287.v2.p3)
- Analyte_isolation_batch_ID - Identifier for analyte isolation batch (phv00531289.v2.p3)
- Analyte_isolation_lab - Name of laboratory performing the analyte isolation (phv00531291.v2.p3)
- Analyte_isolation_year - Year in which analyte was isolated (phv00531290.v2.p3)
- Analyte_sample_ID - Identifier for analyte isolated from primary biosample (phv00531288.v2.p3)
- ANALYTE_TYPE - Type of analyte to be measured from the submitted sample (phv00531286.v2.p3)
- ANALYTE_TYPE - Type of omics assay to be performed (phv00541498.v1.p3)
- ANALYTE_TYPE - Analyte Type (phv00420004.v3.p3)
- ANALYTE_TYPE - Type of omics assay to be performed (phv00541489.v1.p3)
- ANALYTE_TYPE - Type of omics assay to be performed (phv00541509.v1.p3)
- Assay_batch - Data processing batch (phv00531295.v2.p3)
- Assay_lab - Name of assay lab to which the samples were sent (phv00531294.v2.p3)
- Barcode - Illumina chip Sentrix barcode (phv00531296.v2.p3)
- BODY_SITE - Anatomical site at which biosample was taken (phv00531276.v2.p3)
- BODY_SITE - Anatomical site at which biosample was taken (phv00541495.v1.p3)
- BODY_SITE - Body site where sample was collected (phv00420003.v3.p3)
- BODY_SITE - Anatomical site at which biosample was taken (phv00541486.v1.p3)
- BODY_SITE - Anatomical site at which biosample was taken (phv00541506.v1.p3)
- Collection_visit - Study visit at which primary biosample was collected (phv00531284.v2.p3)
- Collection_visit - Study visit when the primary biosample was collected (relevant for longitudianal studies with multiple waves of clinic visits). Y = Year. Duplicates are indicated with "_dup" suffix (phv00541494.v1.p3)
- Collection_visit - Study visit when the primary biosample was collected (relevant for longitudianal studies with multiple waves of clinic visits). Y = Year. Duplicates are indicated with "_dup" suffix (phv00541485.v1.p3)
- Collection_visit - Study visit when the primary biosample was collected (relevant for longitudianal studies with multiple waves of clinic visits). Y = Year. Duplicates are indicated with "_dup" suffix (phv00541505.v1.p3)
- Collection_year - Year in which primary biosample was collected (phv00531283.v2.p3)
- Collection_year - Year in which primary biosample was collected (if not known can note as NA but Age_at_collection is required) (phv00541493.v1.p3)
- Collection_year - Year in which primary biosample was collected (if not known can note as NA but Age_at_collection is required) (phv00541484.v1.p3)
- Collection_year - Year in which primary biosample was collected (if not known can note as NA but Age_at_collection is required) (phv00541504.v1.p3)
- CONSENT - Consent group as determined by DAC (phv00419997.v3.p3)
- decodeDate - Earliest date shown for 'AutoDecode' action in the .idat 'RunInfo' table. Presumably related to the chip manufacturing date. (phv00531299.v2.p3)
- extractDate - Earliest date shown for 'Scan', 'Register' and 'Extract' actions in the .idat 'RunInfo' table. Presumably date when the chip was scanned after hybridization, extension and staining. (phv00531300.v2.p3)
- fasting_hours - Duration of fasting in hours (phv00541500.v1.p3)
- Funding_Source - Project funding source (phv00420007.v3.p3)
- HISTOLOGICAL_TYPE - The primary biosample type (phv00531277.v2.p3)
- HISTOLOGICAL_TYPE - Cell or tissue subtype derived from the Primary biosample (phv00541496.v1.p3)
- HISTOLOGICAL_TYPE - Cell or tissue subtype derived from the Primary biosample (phv00541487.v1.p3)
- HISTOLOGICAL_TYPE - Cell or tissue subtype derived from the Primary biosample (phv00541507.v1.p3)
- IS_TUMOR - Tumor status of the sample (phv00531278.v2.p3)
- IS_TUMOR - Tumor status of the sample (phv00541497.v1.p3)
- IS_TUMOR - Tumor status (phv00420005.v3.p3)
- IS_TUMOR - Tumor status of the sample (phv00541488.v1.p3)
- IS_TUMOR - Tumor status of the sample (phv00541508.v1.p3)
- Material_isolation_batch_ID - Identifier for material isolation batch (phv00531285.v2.p3)
- nSNPsRead - Value reported as 'nSNPsRead' in Illumina .idat file header (phv00531298.v2.p3)
- p.0.01 - Fraction of CpG sites which pass a detection p-value threshold of 0.01 (phv00531302.v2.p3)
- p.0.05 - Fraction of CpG sites which pass a detection p-value threshold of 0.05 (phv00531301.v2.p3)
- Primary_biosample_type - Type of primary biosample (phv00531279.v2.p3)
- Primary_biosample_type - Specifies the type of the primary biosample (phv00541492.v1.p3)
- Primary_biosample_type - Specifies the type of the primary biosample (phv00541483.v1.p3)
- Primary_biosample_type - Specifies the type of the primary biosample (phv00541503.v1.p3)
- RowCol - Illumina chip assay position (phv00531297.v2.p3)
- Sample_container_ID - Identifier for sample plate for shipping samples to assay center (phv00531292.v2.p3)
- SAMPLE_ID - DNA methylation sample identifier (phv00531275.v2.p3)
- SAMPLE_ID - TOPMed identifier for each sample aliquot sent to the omics assay center (phv00541490.v1.p3)
- SAMPLE_ID - Sample ID (phv00420002.v3.p3)
- SAMPLE_ID - TOPMed identifier for each sample aliquot sent to the omics assay center (phv00541481.v1.p3)
- SAMPLE_ID - TOPMed identifier for each sample aliquot sent to the omics assay center (phv00541501.v1.p3)
- SAMPLE_ID - Sample ID (phv00420000.v3.p3)
- Sample_well_ID - Identifier for well of the sample shipment container (phv00531293.v2.p3)
- SEQUENCING_CENTER - Name of the center which conducted sequencing (phv00420006.v3.p3)
- Study_Name - TOPMed-assigned short study name (1:1 with TOPMed phs number) (phv00420010.v3.p3)
- SUBJECT_ID - Subject ID (phv00419996.v3.p3)
- SUBJECT_ID - Subject ID (phv00420001.v3.p3)
- TOPMed_Phase - TOPMed Phase (phv00420008.v3.p3)
- TOPMed_Project - TOPMed Project that funded sequencing (phv00420009.v3.p3)
- UBERON_ID - UBERON ontology identifier for type of primary biosample (phv00531280.v2.p3)
- UBERON_Term - UBERON ontology term for type of primary biosample (phv00531281.v2.p3)