mRNA_TaqMan
Other (124)
- 260/230 - 260/230 (phv00394850.v1.p1)
- 260/280 - 260/280 (phv00394849.v1.p1)
- ACTUAL_TIME_IN_FIXATIVE - Actual Time in Fixative (phv00394745.v1.p1)
- Analyte Type - Analyte type (phv00394858.v1.p1)
- AnonID - AnonID (phv00394846.v1.p1)
- APPEARANCE - Gross appearance of material sent to tissue bank (phv00394771.v1.p1)
- AREA_PERCENTAGE - Percentage of gross area of necrosis of material sent to tissue bank (phv00394769.v1.p1)
- Body Site - PRIMARY_TISSUE_TYPE, Primary Organ (phv00394736.v1.p1)
- Box - Box (phv00394854.v1.p1)
- BPV case ID - BPV case ID (phv00394844.v1.p1)
- CONSISTENT_LOCAL_PRC - This slide is consistent with the findings of the Diagnostic Pathology Report for this case; This slide is consistent with the findings of the local BSS pathologist (phv00394815.v1.p1)
- CONSISTENT_LOCAL_PRC.1 - CONSISTENT_LOCAL_PRC.1 (phv00394838.v1.p1)
- CONTENT_PERCENTAGE - Percentage of tumor content of material sent to tissue bank (phv00394770.v1.p1)
- DATE_SAMPLE_FROZEN - Date/Time the tissue sample was frozen in liquid nitrogen (phv00394739.v1.p1)
- DELAY_TO_FIXATION_TIME - Delay to Fixation Time (phv00394744.v1.p1)
- DETAIL - Specify types and % (phv00394793.v1.p1)
- DETAIL_PRC - Specify types and % (phv00394821.v1.p1)
- DIAGNOSIS - Gross diagnosis of resected tissue (phv00394758.v1.p1)
- DIMEN_MEET_CRITERIA - Do the dimensions of each experimental piece meet the criteria specified within the BPV Surgical Tissue Collection and Preservation Procedure (phv00394785.v1.p1)
- DISEASE_COMMENTS - Comments (phv00394757.v1.p1)
- DISEASE_OBSERVED - Gross appearance of disease was observed in resected tissue (phv00394756.v1.p1)
- EXCESS_RELEASED - Tumor tissue was released to the tissue bank (phv00394759.v1.p1)
- EXCESSD - Dimensions of tissue (phv00394762.v1.p1)
- EXCESSH - Dimensions of tissue (phv00394760.v1.p1)
- EXCESSW - Dimensions of tissue (phv00394761.v1.p1)
- Freezer - Freezer (phv00394852.v1.p1)
- FT_ADDL_TUMOR - Allocated for processing as (phv00394768.v1.p1)
- FTM1 - Allocated for processing as (phv00394763.v1.p1)
- FTM2 - Allocated for processing as (phv00394764.v1.p1)
- FTM3 - Allocated for processing as (phv00394765.v1.p1)
- FTM4 - Allocated for processing as (phv00394766.v1.p1)
- FTM5 - Allocated for processing as (phv00394767.v1.p1)
- GRADE - Histologic Grade (WHO Grading System) ; Two-Tier Grading System Grade; Histologic Grade (Fuhrman Nuclear Grading System); AJCC 7th Edition Histologic Grade (phv00394807.v1.p1)
- GRADE_PRC - Histologic Grade (WHO Grading System) ; Two-Tier Grading System Grade; Histologic Grade (Fuhrman Nuclear Grading System); AJCC 7th Edition Histologic Grade (phv00394834.v1.p1)
- GRADING_SYSTEM - What histologic grading system was applied (phv00394806.v1.p1)
- GRADING_SYSTEM_PRC - What histologic grading system was applied (phv00394833.v1.p1)
- HISTO_ELIGIBLE - Did pathology review of the H and E slide derived from QC FFPE tumor tissue confirm the histological type to be eligible for BPV study (phv00394812.v1.p1)
- HISTO_ELIGIBLE_PRC - Did pathology review of the H and E slide derived from QC FFPE tumor tissue confirm the histological type to be eligible for BPV study (phv00394835.v1.p1)
- HISTOLOGIC_TYPE_PRC - Histologic type (phv00394819.v1.p1)
- Histological Type - Histologic type (phv00394791.v1.p1)
- IS_TUMOR - Tumor status of sample (phv00394857.v1.p1)
- MEETS_CRITERIA - This slide meets the microscopic analysis criteria of the BPV project of necrosis percentage of less than 20% and tumor content of about 50% tumor cells by surface area (phv00394813.v1.p1)
- MEETS_CRITERIA_PRC - This slide meets the microscopic analysis criteria of the BPV project of necrosis percentage of less than 20% and tumor content of about 50% tumor nuclei (phv00394836.v1.p1)
- MEETS_CRITERIA_SAMPLE - This slide meets the microscopic analysis criteria for the BPV project of less than 20% necrosis and tumor content of about 50% tumor nuclei (phv00394841.v1.p1)
- METHOD_OF_FREEZING - Method of Freezing (phv00394740.v1.p1)
- MODULE - MODULE (phv00394737.v1.p1)
- Nanodrop Conc (ng/uL) - Nanodrop Conc (ng/uL) (phv00394848.v1.p1)
- NON_CELLULAR_DESC - If present, describe Non-Cellular component (phv00394804.v1.p1)
- NORMAL_ADJ_RELEASED - Normal adjacent tissue was released to the tissue bank in addition to tumor tissue? (phv00394786.v1.p1)
- NORMAL_ADJD - Dimensions of tissue (phv00394789.v1.p1)
- NORMAL_ADJH - Dimensions of tissue (phv00394787.v1.p1)
- NORMAL_ADJW - Dimensions of tissue (phv00394788.v1.p1)
- Organ - Organ (phv00394845.v1.p1)
- ORGAN_ORIGIN_PRC - Organ of origin (phv00394818.v1.p1)
- OTHER_HISTOLOGIC_TYPE - Specify type (phv00394792.v1.p1)
- OTHER_HISTOLOGIC_TYPE_PRC - Specify type: (phv00394820.v1.p1)
- PATH_METASTASES - CM: Pathologic Spread Distant Metastases (AJCC 7th Edition) (phv00394810.v1.p1)
- PATH_NODES - PN: Pathologic Spread Lymph Nodes (AJCC 7th Edition) (phv00394809.v1.p1)
- PATH_STAGE - Pathologic Tumor Stage Grouping (FIGO) (phv00394811.v1.p1)
- PATH_TUMOR - PT: Pathologic Spread Primary Tumor (AJCC 7th Edition) (phv00394808.v1.p1)
- PCT_NECROTIC_TISSUE - Percent of cross-sectional surface area of entire slide composed of necrotic tissue (phv00394799.v1.p1)
- PCT_NECROTIC_TISSUE_PRC - Percent of cross-sectional surface area of entire slide composed of necrotic tissue (phv00394827.v1.p1)
- PCT_NECROTIC_TUMOR - Percent Necrotic Tumor by surface area (phv00394801.v1.p1)
- PCT_NECROTIC_TUMOR_PRC - Percent Necrotic Tumor by surface area (phv00394829.v1.p1)
- PCT_NON_CELLULAR - Percent Non-Cellular Component by surface area (i.e., mucin, hemorrhage, blood clot, etc.) (phv00394803.v1.p1)
- PCT_NON_CELLULAR_PRC - Percent Non-Cellular Component by surface area (i.e., mucin, hemorrhage, blood clot, etc.) (phv00394831.v1.p1)
- PCT_TUMOR_AREA - Percent of cross-sectional surface area of entire slide composed of tumor focus (includes necrotic tumor) (phv00394797.v1.p1)
- PCT_TUMOR_AREA_PRC - Percent of cross-sectional surface area of entire slide composed of tumor focus (Includes necrotic tumor) (phv00394825.v1.p1)
- PCT_TUMOR_CELLULARITY - Percent of tumor nuclei by cell count of the entire slide (number of tumor epithelial cell nuclei as compared to all cell nuclei) (phv00394798.v1.p1)
- PCT_TUMOR_CELLULARITY_PRC - Percent of tumor nuclei by cell count of the entire slide (number of tumor epithelial cell nuclei as compared to all cell nuclei): (phv00394826.v1.p1)
- PCT_VIABL_TUMOR - Percent Viable Tumor by surface area (not including stroma) (phv00394800.v1.p1)
- PCT_VIABL_TUMOR_PRC - Percent Viable Tumor by surface area (not including stroma) (phv00394828.v1.p1)
- PCT_VIABLE_NON_TUMOR - Percent Tumor Stroma by surface area (phv00394802.v1.p1)
- PCT_VIABLE_NON_TUMOR_PRC - Percent Tumor Stroma by surface area (phv00394830.v1.p1)
- PERC_TUMOR - Percent tumor nuclei (phv00394843.v1.p1)
- PROTOCOL - Experimental Protocol A-D AND QC FFPE (Middle Left) Section (phv00394738.v1.p1)
- Qubit Conc (ng/uL) - Qubit Conc (ng/uL) (phv00394851.v1.p1)
- Rack - Rack (phv00394853.v1.p1)
- REASON_NOT_CONS - Specify findings (phv00394816.v1.p1)
- REASON_NOT_CONS_PRC - Specify findings (phv00394839.v1.p1)
- REASON_NOT_MEET - Specify findings (phv00394814.v1.p1)
- REASON_NOT_MEET_PRC - Specify findings (phv00394837.v1.p1)
- REASON_NOT_MEET_SAMPLE - Comments (phv00394842.v1.p1)
- RESECTION_WEIGHT - Weight of resection (phv00394755.v1.p1)
- RESECTIOND - Dimensions of resection (phv00394754.v1.p1)
- RESECTIONH - Dimensions of resection (phv00394752.v1.p1)
- RESECTIONW - Dimensions of resection (phv00394753.v1.p1)
- RIN - RIN (phv00394856.v1.p1)
- ROOM_HUMIDITY - Humidity of pathology gross room when specimen arrived from OR (phv00394751.v1.p1)
- ROOM_TEMPERATURE - Temperature of pathology gross room when specimen arrived from OR (phv00394750.v1.p1)
- SAME_ORIGIN_TYPE - Organ of origin and histologic type are the same as the QC section (phv00394840.v1.p1)
- SAMPLE_ID - Aliquot ID (phv00394735.v1.p1)
- SARCOMATOID - Presence of Sarcomatoid features (phv00394794.v1.p1)
- SARCOMATOID_DESC - Describe Sarcomatoid features (phv00394795.v1.p1)
- SARCOMATOID_DESC_PRC - Describe Sarcomatoid features (phv00394823.v1.p1)
- SARCOMATOID_PRC - Presence of Sarcomatoid features (phv00394822.v1.p1)
- SEC_TISD - Dimensions of second piece of tumor tissue (if applicable) (phv00394775.v1.p1)
- SEC_TISH - Dimensions of second piece of tumor tissue (if applicable) (phv00394773.v1.p1)
- SEC_TISSUE_COLLECT - Was a second piece of tumor tissue collected (phv00394772.v1.p1)
- SEC_TISW - Dimensions of second piece of tumor tissue (if applicable) (phv00394774.v1.p1)
- SLIDE_MODULE - Slide ID examined by pathologist (phv00394790.v1.p1)
- SLIDE_MODULE_PRC - Slide ID examined by pathologist (phv00394817.v1.p1)
- Slot - Slot (phv00394855.v1.p1)
- SOP - BPV SOP governing transport of tissue from OR to pathology gross room (phv00394748.v1.p1)
- ST_ADDL_TUMOR - Allocated for processing as (phv00394781.v1.p1)
- ST_APPEARANCE - Gross appearance of second piece of tumor tissue sent to tissue bank (if applicable) (phv00394784.v1.p1)
- ST_AREA_PERCENTAGE - Percentage of gross area of necrosis of second piece of tumor tissue sent to tissue bank (if applicable) (phv00394782.v1.p1)
- ST_CONTENT_PERCENTAGE - Percentage of tumor content of second piece of tumor tissue sent to tissue bank (if applicable) (phv00394783.v1.p1)
- STM1 - Allocated for processing as (phv00394776.v1.p1)
- STM2 - Allocated for processing as (phv00394777.v1.p1)
- STM3 - Allocated for processing as (phv00394778.v1.p1)
- STM4 - Allocated for processing as (phv00394779.v1.p1)
- STM5 - Allocated for processing as (phv00394780.v1.p1)
- TIME_PROC_END_EMBED_START - Time between Tissue Processor Cycle Completion and Embedding (phv00394746.v1.p1)
- TIME_TRANSFERRED - Time Transferred (phv00394741.v1.p1)
- TISSUE_RECEIVED - Tissue received in Gross Room from OR (phv00394747.v1.p1)
- TOTAL - Histologic Profile Total % (should equal 100%) (phv00394805.v1.p1)
- TOTAL_PRC - Histologic Profile Total (phv00394832.v1.p1)
- TRANSFERRED_TO - Transferred to (phv00394742.v1.p1)
- TRANSPORT_PERFORMED - Transport of tissue was performed per BPV Surgical Tissue Collection and Preservation SOP (phv00394749.v1.p1)
- TUMOR_DIMENSION - Greatest tumor dimension on slide (phv00394796.v1.p1)
- TUMOR_DIMENSION_PRC - Greatest tumor dimension on slide (phv00394824.v1.p1)
- Volume (uL) - Volume (uL) (phv00394847.v1.p1)
- WEIGHT - Weight of frozen tumor block (phv00394743.v1.p1)