LCCC 1108 (UNCseqTM)

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ABRA: improved coding indel detection via assembly-based realignment

Lisle E. Mose, M. Wilkerson, D. N. Hayes, et al.. (2014). Bioinformatics. Cited 163 times. https://doi.org/10.1093/bioinformatics/btu376

Identification of Clonal Hematopoiesis Mutations in Solid Tumor Patients Undergoing Unpaired Next-Generation Sequencing Assays

Catherine C Coombs, N. Gillis, X. Tan, et al.. (2018). Clinical Cancer Research. Cited 92 times. https://doi.org/10.1158/1078-0432.CCR-18-1201

Enhancing Next‐Generation Sequencing‐Guided Cancer Care Through Cognitive Computing

N. Patel, Vanessa V. Michelini, Jeff M Snell, et al.. (2017). The Oncologist. Cited 90 times. https://doi.org/10.1634/theoncologist.2017-0170

Germline Analysis from Tumor–Germline Sequencing Dyads to Identify Clinically Actionable Secondary Findings

Bryce A. Seifert, Julianne M. O’Daniel, K. Amin, et al.. (2016). Clinical Cancer Research. Cited 73 times. https://doi.org/10.1158/1078-0432.CCR-16-0015

Targeted next generation sequencing identifies clinically actionable mutations in patients with melanoma

William R. Jeck, J. Parker, Craig C. Carson, et al.. (2014). Pigment Cell & Melanoma Research. Cited 39 times. https://doi.org/10.1111/pcmr.12238

Combined Targeted DNA Sequencing in Non-Small Cell Lung Cancer (NSCLC) Using UNCseq and NGScopy, and RNA Sequencing Using UNCqeR for the Detection of Genetic Aberrations in NSCLC

Xiaobei Zhao, Anyou Wang, Vonn Walter, et al.. (2015). PLoS ONE. Cited 37 times. https://doi.org/10.1371/journal.pone.0129280

The next steps in next-gen sequencing of cancer genomes.

D. Hayes, William Y. Kim. (2015). The Journal of clinical investigation. Cited 33 times. https://doi.org/10.1172/JCI68339

Improved Tumor Purity Metrics in Next-generation Sequencing for Clinical Practice: The Integrated Interpretation of Neoplastic Cellularity and Sequencing Results (IINCaSe) Approach

N. Patel, Heejoon Jo, D. Eberhard, et al.. (2018). Applied Immunohistochemistry & Molecular Morphology. Cited 22 times. https://doi.org/10.1097/PAI.0000000000000684

The Prognostic Significance of Low-Frequency Somatic Mutations in Metastatic Cutaneous Melanoma

Xiaobei Zhao, Paul Little, A. Hoyle, et al.. (2019). Frontiers in Oncology. Cited 16 times. https://doi.org/10.3389/fonc.2018.00584

Identification of Human Papillomavirus Infection in Cancer Tissue by Targeted Next-generation Sequencing

Nathan D. Montgomery, J. Parker, D. Eberhard, et al.. (2016). Applied Immunohistochemistry & Molecular Morphology. Cited 15 times. https://doi.org/10.1097/PAI.0000000000000215

Exceptional Chemotherapy Response in Metastatic Colorectal Cancer Associated With Hyper-Indel-Hypermutated Cancer Genome and Comutation of POLD1 and MLH1.

Manish R. Sharma, J. Auman, N. Patel, et al.. (2017). JCO precision oncology. Cited 4 times. https://doi.org/10.1200/PO.16.00015
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