Comprehensive Integration of Single-Cell Data
Tim Stuart, Andrew Butler, Paul J. Hoffman, et al.. (2018). Cell. Cited 11,858 times. https://doi.org/10.1101/460147Dimensionality reduction for visualizing single-cell data using UMAP
E. Becht, Leland McInnes, John Healy, et al.. (2018). Nature Biotechnology. Cited 4,373 times. https://doi.org/10.1038/nbt.4314Isolation of mononuclear cells and granulocytes from human blood. Isolation of monuclear cells by one centrifugation, and of granulocytes by combining centrifugation and sedimentation at 1 g.
A. Böyum. (1968). Scandinavian journal of clinical and laboratory investigation. Supplementum. Cited 3,980 times.Large-scale simultaneous measurement of epitopes and transcriptomes in single cells
Marlon Stoeckius, Christoph Hafemeister, William Stephenson, et al.. (2017). Nature methods. Cited 2,099 times. https://doi.org/10.1038/nmeth.4380An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues
M. Corces, Alexandro E. Trevino, Emily G. Hamilton, et al.. (2017). Nature Methods. Cited 2,003 times. https://doi.org/10.1038/nmeth.4396Single-cell chromatin accessibility reveals principles of regulatory variation
Jason D. Buenrostro, Beijing Wu, Ulrike Litzenburger, et al.. (2015). Nature. Cited 1,977 times. https://doi.org/10.1038/nature14590The UCSC Genome Browser Database: update 2006
A. Hinrichs, D. Karolchik, R. Baertsch, et al.. (2005). Nucleic Acids Research. Cited 1,826 times. https://doi.org/10.1093/nar/gkj144UpSet: Visualization of Intersecting Sets
A. Lex, Nils Gehlenborg, Hendrik Strobelt, et al.. (2014). IEEE Transactions on Visualization and Computer Graphics. Cited 1,768 times. https://doi.org/10.1109/TVCG.2014.2346248Lineage-specific and single cell chromatin accessibility charts human hematopoiesis and leukemia evolution
M. Corces, Jason D. Buenrostro, Jason D. Buenrostro, et al.. (2016). Nature genetics. Cited 999 times. https://doi.org/10.1038/ng.3646Massively parallel single-cell chromatin landscapes of human immune cell development and intratumoral T cell exhaustion
Ansuman T. Satpathy, Jeffrey M. Granja, K. Yost, et al.. (2019). Nature Biotechnology. Cited 779 times. https://doi.org/10.1038/s41587-019-0206-zscNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells
Stephen J. Clark, R. Argelaguet, Chantriolnt-Andreas Kapourani, et al.. (2018). Nature Communications. Cited 556 times. https://doi.org/10.1038/s41467-018-03149-4Droplet-based combinatorial indexing for massive-scale single-cell chromatin accessibility
C. Lareau, Fabiana M. Duarte, J. Chew, et al.. (2019). Nature Biotechnology. Cited 372 times. https://doi.org/10.1038/s41587-019-0147-6Simultaneous trimodal single-cell measurement of transcripts, epitopes, and chromatin accessibility using TEA-seq
Elliott Swanson, Cara Lord, Julian Reading, et al.. (2021). eLife. Cited 175 times. https://doi.org/10.7554/eLife.63632Chromatin compaction under mixed salt conditions: Opposite effects of sodium and potassium ions on nucleosome array folding
Abdollah Allahverdi, Qinming Chen, N. Korolev, et al.. (2015). Scientific Reports. Cited 79 times. https://doi.org/10.1038/srep08512Immunoglobulin allotypes and familial cutaneous malignant melanoma/dysplastic nevi. A family study.
R. B. Buchmann, S. Bale, M. Greene, et al.. (1988). Experimental and clinical immunogenetics.