A Single Cell Atlas of MMRd and MMRp Colorectal Cancer
Demographics (2)
- Sex - Subject sex (phv00492153.v1.p1)
- SEX - Biological sex (phv00492149.v1.p1)
Disease Events (20)
- Age - Subject age at diagnosis (phv00492154.v1.p1)
- HistologicGrade_detailed - Histologic grade (phv00492177.v1.p1)
- HistologicGradeSimple - Histologic grade simplified (phv00492178.v1.p1)
- HistologicTypeSimple - Histological type (phv00492170.v1.p1)
- MetastasisStatus - Metastasis status according to TNM classification (on resection specimen path report) (phv00492182.v1.p1)
- MLH1Status - Methylation status of MLH1 promoter region (phv00492173.v1.p1)
- MLH1Status - Methylation status of MLH1 promoter region (phv00492158.v1.p1)
- MMR_IHC - Mismatch repair protein expression (hMLH1, hMSH2, hMSH6, hPMS2) by immunohistochemistry (phv00492171.v1.p1)
- MMRMLH1Tumor - MMR status and methylation status of MLH1 promoter region (phv00492174.v1.p1)
- MMRStatus - Mismatch repair status (phv00492172.v1.p1)
- MMRStatus - Mismatch repair status (phv00492157.v1.p1)
- NodeStatus_detailed - Node status according to TNM classification (on resection specimen path report) (phv00492180.v1.p1)
- NodeStatusSimple - Node status simplified (phv00492181.v1.p1)
- SizeQuantile - Size divided in four equal quantiles (1=smallest to 4=largest) (phv00492184.v1.p1)
- SurvivalStatus - Survival status at last access (phv00492160.v1.p1)
- TimeToDeath - Time from diagnosis to death (days) (phv00492161.v1.p1)
- TissueSite_detailed - Tissue site (phv00492175.v1.p1)
- TissueSiteSimple - Tissue site simplified (phv00492176.v1.p1)
- TumorSize - Tumor size in cm (phv00492183.v1.p1)
- TumorStage - Tumor stage according to TNM classification (on resection specimen path report) (phv00492179.v1.p1)
Race and Ethnicity (2)
- Ethnicity - Ethnicity (Hispanic or Latino) (phv00492155.v1.p1)
- Race - Race (phv00492156.v1.p1)
Other (16)
- CONSENT - Consent group as determined by DAC (phv00492148.v1.p1)
- DaysDiagnosisToLastAccess - Days between diagnosis and last record access (phv00492159.v1.p1)
- GEO_ACCESSION - GEO accession ID (phv00493295.v1.p1)
- PatientTypeID - Patient barcode, specimen type, and specimen index (phv00492169.v1.p1)
- PROCESSING_TYPE - Enrichment strategy prior to loading onto 10x channel (phv00492167.v1.p1)
- SAMPLE_ID - Sample ID Barcode (Subject_ID; Specimen_Type; Source_Hospital with 0=DFCI and 1=MGH; Tissue_Processing_Team with 0=CCPM, 1=Hacohen, 2=CCPM_Hacohen, 3=Combined; Processing_Type with 0=unsorted, 1=CD45pMACS, 2=mixUnsortCD45MACS, 3=LiveMACS, 12=CD45pCD3nCD19nMACS) (phv00492162.v1.p1)
- SAMPLE_ID - Sample ID (phv00492151.v1.p1)
- SAMPLE_ID - Sample ID (phv00493294.v1.p1)
- SINGLECELL_TYPE - Single cell technology and version (phv00492168.v1.p1)
- SOURCE_HOSPITAL - Source facility (phv00492165.v1.p1)
- SPECIMEN_INDEX - Specifies which specimen if a synchronous lesion was present and collected (phv00492164.v1.p1)
- SPECIMEN_TYPE - Clinical specimen type (phv00492163.v1.p1)
- SUBJECT_ID - Subject ID (phv00492152.v1.p1)
- SUBJECT_ID - Subject ID (phv00492147.v1.p1)
- SUBJECT_ID - Subject ID (phv00492150.v1.p1)
- TISSUE_PROCESSING_TEAM - Processing team (phv00492166.v1.p1)