METSIM Subcutaneous Adipose Needle Biopsy RNA-Seq
Geography (1)
- BODY_SITE - Body site where sample was collected (phv00543179.v1.p1)
Race and Ethnicity (1)
- RACE - Race (phv00543164.v1.p1)
Other (28)
- Adipocyte - Estimated cell-type proportions from SCDC tree-based approach (phv00543165.v1.p1)
- ANALYTE_TYPE - Analyte Type (phv00543180.v1.p1)
- B - Estimated cell-type proportions from SCDC tree-based approach (phv00543174.v1.p1)
- BIOPSY_TYPE - Type of biopsy (phv00543183.v1.p1)
- DELETION_SIZE - Median of deletions across reads calculated using RSeQC (phv00543190.v1.p1)
- Endothelial - Estimated cell-type proportions from SCDC tree-based approach (phv00543166.v1.p1)
- Fibroblast - Estimated cell-type proportions from SCDC tree-based approach (phv00543167.v1.p1)
- GEO_ACCESSION - GEO accession ID (GSM#) (phv00543177.v1.p1)
- HAS_GENOTYPE - Has genotype available in METSIM parent study (phv00543186.v1.p1)
- HISTOLOGICAL_TYPE - Cell or tissue type or subtype of sample (phv00543182.v1.p1)
- INSERTION_SIZE_MEAN_R1R2 - Median of insertions across reads and mean of read 1 and read 2 calculated using RSeQC (phv00543191.v1.p1)
- IS_PUBLISHED_N426 - The sample is included in PMID: 34995504 (Brotman and Raulerson et al., 2022, AJHG) and AdipoExpress publication (phv00543188.v1.p1)
- IS_PUBLISHED_N434 - The sample is included in PMID: 37647564 (Brotman et al., 2023, Diabetes) and PMID: 31564431 (Raulerson et al., 2019) (phv00543187.v1.p1)
- IS_SHARED_FUSION - Multiple samples from the same subject with FUSION adipose (phv00543185.v1.p1)
- IS_SHARED_METSIM_SURGICAL - Multiple samples from the same subject with METSIM needle biopsies (phv00543184.v1.p1)
- IS_TUMOR - Tumor status (phv00543181.v1.p1)
- Macrophage - Estimated cell-type proportions from SCDC tree-based approach (phv00543171.v1.p1)
- Mast - Estimated cell-type proportions from SCDC tree-based approach (phv00543168.v1.p1)
- Neutrophil - Estimated cell-type proportions from SCDC tree-based approach (phv00543175.v1.p1)
- Perivascular - Estimated cell-type proportions from SCDC tree-based approach (phv00543170.v1.p1)
- Preadipocyte - Estimated cell-type proportions from SCDC tree-based approach (phv00543169.v1.p1)
- RIN - RNA integrity number (phv00543189.v1.p1)
- SAMPLE_ID - Sample ID (phv00543178.v1.p1)
- SAMPLE_ID - Sample ID (phv00543176.v1.p1)
- SEQUENCING_BATCH - RNA-sequencing batch (phv00543192.v1.p1)
- SUBJECT_ID - Subject ID (phv00543163.v1.p1)
- T_naive - Estimated cell-type proportions from SCDC tree-based approach (phv00543172.v1.p1)
- T_NK - Estimated cell-type proportions from SCDC tree-based approach (phv00543173.v1.p1)