METSIM Subcutaneous Adipose Surgical Biopsy RNA-Seq
Race and Ethnicity (1)
- RACE - Race (phv00543220.v1.p1)
Other (33)
- Adipocyte - Estimated cell-type proportions from SCDC tree-based approach (phv00543221.v1.p1)
- ANALYTE_TYPE - Analyte Type (phv00543234.v1.p1)
- B - Estimated cell-type proportions from SCDC tree-based approach (phv00543230.v1.p1)
- Biopsy_Number - Biopsy number (phv00565325.v1.p1)
- BIOPSY_TYPE - Type of biopsy (phv00543237.v1.p1)
- BODY_SITE - Body site where sample was collected (phv00543233.v1.p1)
- DELETION_SIZE - Median of deletions across reads calculated using RSeQC (phv00543246.v1.p1)
- Endothelial - Estimated cell-type proportions from SCDC tree-based approach (phv00543222.v1.p1)
- Fibroblast - Estimated cell-type proportions from SCDC tree-based approach (phv00543223.v1.p1)
- HAS_GENOTYPE - Has genotype available in METSIM parent study (phv00543242.v1.p1)
- HISTOLOGICAL_TYPE - Cell or tissue type or subtype of sample (phv00543236.v1.p1)
- INSERTION_SIZE_MEAN_R1R2 - Median of insertions across reads and mean of read 1 and read 2 calculated using RSeQC (phv00543247.v1.p1)
- IS_DUPLICATE - Multiple samples from the same subject collected at the same time (phv00543241.v1.p1)
- IS_LONGITUDINAL_WITHIN - Multiple samples from the same subject at different time points within dataset (phv00543238.v1.p1)
- IS_PUBLISHED_N420 - The sample is included in AdipoExpress publication (phv00543244.v1.p1)
- IS_PUBLISHED_N425 - The sample is included in Brotman et al. (2023) Diabetes (phv00543243.v1.p1)
- IS_SHARED_FUSION - Multiple samples from the same subject with FUSION adipose (phv00543240.v1.p1)
- IS_SHARED_METSIM_NEEDLE - Multiple samples from the same subject with METSIM needle biopsies (phv00543239.v1.p1)
- IS_TUMOR - Tumor status (phv00543235.v1.p1)
- LONGITUDINAL_SAMPLE_NUMBER - First or second timepoint when there are multiple samples from the same subject within the dataset (phv00555826.v1.p1)
- Macrophage - Estimated cell-type proportions from SCDC tree-based approach (phv00543227.v1.p1)
- Mast - Estimated cell-type proportions from SCDC tree-based approach (phv00543224.v1.p1)
- Neutrophil - Estimated cell-type proportions from SCDC tree-based approach (phv00543231.v1.p1)
- Perivascular - Estimated cell-type proportions from SCDC tree-based approach (phv00543226.v1.p1)
- Preadipocyte - Estimated cell-type proportions from SCDC tree-based approach (phv00543225.v1.p1)
- RIN - RNA integrity number (phv00543245.v1.p1)
- RNA_EXTRACTION_BATCH - RNA extraction batch (phv00543248.v1.p1)
- SAMPLE_ID - Sample ID (phv00543232.v1.p1)
- SEQ_BATCH_NAME - The name of the Nova-Seq 6000 sequencing batch (phv00543249.v1.p1)
- SEQUENCING_BATCH - RNA-sequencing batch (phv00543250.v1.p1)
- SUBJECT_ID - Subject ID (phv00543219.v1.p1)
- T_naive - Estimated cell-type proportions from SCDC tree-based approach (phv00543228.v1.p1)
- T_NK - Estimated cell-type proportions from SCDC tree-based approach (phv00543229.v1.p1)