Ongoing Replication Stress Tolerance and Clonal T Cell Responses Distinguish Liver and Lung Recurrence and Patient Outcomes in Pancreatic Ductal Adenocarcinoma

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Demographics (2)

AGE_AT_DIAGNOSIS - Subject age at diagnosis (phv00542228.v1.p1)
SEX - Biological sex (phv00542219.v1.p1)

Disease Events (52)

AFFECTION_STATUS - Case control status of the subject for PDAC; All subjects are PDAC patients. (phv00542225.v1.p1)
APOB - Gene symbol for genes altered in 10 or more tumor samples (phv00542258.v1.p1)
ARID1A - Gene symbol for genes altered in 10 or more tumor samples (phv00542259.v1.p1)
ARID1B - Gene symbol for genes altered in 10 or more tumor samples (phv00542260.v1.p1)
ATM - Gene symbol for genes altered in 10 or more tumor samples (phv00542261.v1.p1)
ATRX - Gene symbol for genes altered in 10 or more tumor samples (phv00542262.v1.p1)
BCOR - Gene symbol for genes altered in 10 or more tumor samples (phv00542263.v1.p1)
BRAF - Gene symbol for genes altered in 10 or more tumor samples (phv00542264.v1.p1)
BRCA2 - Gene symbol for genes altered in 10 or more tumor samples (phv00542265.v1.p1)
CDKN2A - Gene symbol for genes altered in 10 or more tumor samples (phv00542266.v1.p1)
CDKN2B - Gene symbol for genes altered in 10 or more tumor samples (phv00542267.v1.p1)
CREBBP - Gene symbol for genes altered in 10 or more tumor samples (phv00542268.v1.p1)
CUX1 - Gene symbol for genes altered in 10 or more tumor samples (phv00542269.v1.p1)
DIAGNOSIS - Diagnosis (phv00542227.v1.p1)
ELF3 - Gene symbol for genes altered in 10 or more tumor samples (phv00542270.v1.p1)
GATA1 - Gene symbol for genes altered in 10 or more tumor samples (phv00542271.v1.p1)
GNAS - Gene symbol for genes altered in 10 or more tumor samples (phv00542272.v1.p1)
GRADE_DIFFERENTIATION - Grade differentiation from cancer registry NA if cancer registry data was not available (phv00542236.v1.p1)
IS_TUMOR - Primary tumor or metastisis (phv00542251.v1.p1)
KDM5C - Gene symbol for genes altered in 10 or more tumor samples (phv00542273.v1.p1)
KDM6A - Gene symbol for genes altered in 10 or more tumor samples (phv00542274.v1.p1)
KMT2A - Gene symbol for genes altered in 10 or more tumor samples (phv00542275.v1.p1)
KMT2D - Gene symbol for genes altered in 10 or more tumor samples (phv00542276.v1.p1)
KRAS - Gene symbol for genes altered in 10 or more tumor samples (phv00542277.v1.p1)
LRP1B - Gene symbol for genes altered in 10 or more tumor samples (phv00542278.v1.p1)
LYMPH_VASCULAR_INVASION - Lymph node vascular invasion status NA if cancer registry data was not available (phv00542237.v1.p1)
MICROSATELLITE_INSTABILITY - Classification of microsatellite instability (phv00542255.v1.p1)
MTAP - Gene symbol for genes altered in 10 or more tumor samples (phv00542279.v1.p1)
NEOADJUVANT_TREATMENT - Did subject get chemotherapy before primary resection (phv00542230.v1.p1)
NOTCH1 - Gene symbol for genes altered in 10 or more tumor samples (phv00542280.v1.p1)
PBRM1 - Gene symbol for genes altered in 10 or more tumor samples (phv00542281.v1.p1)
PERCENT_TUMOR_FROM_DNA - Tumor purity calculated from sample DNA (phv00542253.v1.p1)
PERCENT_TUMOR_FROM_PATHOLOGIST_ESTIMATE - Pathologist estimate of tumor purity (phv00542252.v1.p1)
PMS2 - Gene symbol for genes altered in 10 or more tumor samples (phv00542282.v1.p1)
PRIMARY_SITE - Site of primary tumor (phv00542226.v1.p1)
RBM10 - Gene symbol for genes altered in 10 or more tumor samples (phv00542283.v1.p1)
RECURRENCE - Was there any metastatic recurrence after resection? (phv00542232.v1.p1)
RECURRENCE_SITE - Where was the primary recurrence? (phv00542233.v1.p1)
REGIONAL_LYMPH_NODES_EXAMINED - Number of regional lymph nodes examined NA if cancer registry data was not available (phv00542238.v1.p1)
REGIONAL_LYMPH_NODES_POSITIVE - Number of regional lymph nodes found positive NA if cancer registry data was not available (phv00542239.v1.p1)
RESECTED - Did subject have a primary tumor resection (phv00542229.v1.p1)
RNF43 - Gene symbol for genes altered in 10 or more tumor samples (phv00542284.v1.p1)
SAMPLE_TYPE - Primary tumor, metastisis, or matched normal (phv00542248.v1.p1)
SMAD4 - Gene symbol for genes altered in 10 or more tumor samples (phv00542285.v1.p1)
SMARCB1 - Gene symbol for genes altered in 10 or more tumor samples (phv00542286.v1.p1)
STAGE_GROUPING - Stage grouping from cancer registry NA if cancer registry data was not available (phv00542235.v1.p1)
STK11 - Gene symbol for genes altered in 10 or more tumor samples (phv00542287.v1.p1)
TGFBR2 - Gene symbol for genes altered in 10 or more tumor samples (phv00542288.v1.p1)
TP53 - Gene symbol for genes altered in 10 or more tumor samples (phv00542289.v1.p1)
TSC2 - Gene symbol for genes altered in 10 or more tumor samples (phv00542290.v1.p1)
TUMOR_MUTATION_BURDEN - Tumor mutational burden estimated from DNA panel data (phv00542254.v1.p1)
VITAL_STATUS_AT_FU - Vital status at last follow up (phv00542244.v1.p1)

Race and Ethnicity (2)

ETHNICITY - Subject ethnicity (phv00542224.v1.p1)
RACE - Subject race (phv00542223.v1.p1)

Other (18)

ANALYTE_TYPE - Analyte Type (phv00542250.v1.p1)
BODY_SITE - Body site where sample was collected (phv00542249.v1.p1)
CONSENT - Consent group as determined by DAC (phv00542218.v1.p1)
DAYS_FROM_DIAGNOSIS_TO_FU - Days from diagnosis to last follow up NA if not known (phv00542240.v1.p1)
DAYS_FROM_EARLIEST_RECURRENCE_TO_FU - Days from earliest recurrence to last follow up NA if not known or no recurrence (phv00542243.v1.p1)
DAYS_FROM_RESECTION_TO_FU - Days from resection to last follow up NA if not known or no resection (phv00542242.v1.p1)
DAYS_FROM_RESECTION_TO_RECURRENCE - Days from diagnosis to last follow up NA if not known (phv00542241.v1.p1)
GEO_ACCESSION - GEO accession ID (GSM#) (phv00542246.v1.p1)
LIVER_LUNG_COHORTS_BY_CT - Liver vs Lung cohorts based on CT scans (phv00542231.v1.p1)
PRIMARY_SITE_MAJOR_GROUPS_FOR_STAGING - Primary tumor site major groups used for staging from cancer registry NA if cancer registry data was not available (phv00542234.v1.p1)
PURIST_SUBTYPE - Subtype call for sample based on PurIST method applied to RNA-Seq data from sample (phv00542256.v1.p1)
SAMPLE_ID - Sample ID (phv00542247.v1.p1)
SAMPLE_ID - Sample ID (phv00542221.v1.p1)
SAMPLE_ID - Sample ID (phv00542245.v1.p1)
SUBJECT_ID - Subject ID (phv00542222.v1.p1)
SUBJECT_ID - Subject ID (phv00542217.v1.p1)
SUBJECT_ID - Subject ID (phv00542220.v1.p1)
XT_PANEL_VERSION - Version of Tempus xT panel used for sample (phv00542257.v1.p1)