<p>We discovered genomic and epigenomic dysregulation originating at sites of human papillomavirus (HPV) integration following the Oxford Nanopore long-read analysis of 72 cervical cancer genomes. The integration events had allele-specific effects on the genome, methylome, and transcriptome, which sometimes resulted in the activation of cancer genes. We also examined the 72 samples using Illumina short-read analysis in <a href="https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000528">phs000528</a>.</p>

Rearrangements of Viral and Human Genomes at Human Papillomavirus    Integration Events and Their Allele-Specific Impacts on Cancer Genome    Regulation

Uterine Cervical Neoplasms study with Methylome sequencing, SNP/CNV Genotypes (NGS) + 1 more data on dbGaP (72 participants)

phs003780 — Rearrangements of Viral and Human Genomes at Human Papillomavirus    Integration Events and Their Allele-Specific Impacts on Cancer Genome    Regulation

Rearrangements of Viral and Human Genomes at Human Papillomavirus Integration Events and Their Allele-Specific Impacts on Cancer Genome Regulation

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