SCORCH: Single Nuclei Transcriptome Profiling in Addiction Circuitry of the HIV+ Brain
Demographics (2)
- AGE - Age at death, in years (phv00570488.v1.p1)
- SEX - Biological sex (phv00570479.v1.p1)
Medications (1)
- ANTIRETROVIRAL_THERAPY - Controlled vocabulary of antiretroviral treatments (three letter treatment codes). If subject has a history of multiple antiretroviral therapies, this field indicates the most recent (phv00570497.v1.p1)
Race and Ethnicity (2)
- ETHNICITY - Ethnicity of the subject (phv00570491.v1.p1)
- RACE - Race of subject (phv00570487.v1.p1)
Other (42)
- ANALYTE_TYPE - Analyte type (phv00570519.v1.p1)
- ANATOMICAL_SITE - Anatomical site assayed using UBERON Ontology (phv00570522.v1.p1)
- AUTOPSY_YEAR - Year autopsy was conducted (phv00570490.v1.p1)
- BODY_SITE - Body site where sample was collected (phv00570518.v1.p1)
- BRAIN_PATHOLOGY - Free text for brain pathology description coming from tissue sources. (phv00570495.v1.p1)
- COGNITIVE_STATUS - Free text for most recent cognitive status determined by tissue source (phv00570494.v1.p1)
- CONSENT - Registered consent groups (Data Use Limitations (DUL)) as determined by submitters' Institutional Review Boards (IRB) or equivalent body. (phv00570478.v1.p1)
- DIAGNOSIS_WITHIN_TWO_YEARS_OF_DEATH - Semicolon separated list of any diagnosed substance use disorders within two years of death. Criteria used and code (e.g. PRISM: , DSM_IV:303.90) (phv00570514.v1.p1)
- IS_TUMOR - Tumor status (phv00570520.v1.p1)
- LIFETIME_DIAGNOSIS - Semicolon separated list of any diagnosed substance use disorders. Criteria used and code (e.g. PRISM: stimulant abuse_dependance, DSM_IV:303.90) (phv00570515.v1.p1)
- MONTHS_SINCE_LAST_PLASMA_VIRAL_MEASUREMENT - Number of months prior to death of last plasma viral measurement (phv00570499.v1.p1)
- OVERDOSE_DEATH - Was death due to a drug overdose (phv00570516.v1.p1)
- PLASMA_VIRAL_LOAD_MEASUREMENT - Most recent HIV viral load measurement prior to death or at necropsy, copies per ml (phv00570498.v1.p1)
- POOLING - IDs of subjects included in the pool represented by the given SUBJECT_ID for this row of the dataset. (phv00570784.v1.p1)
- POSTMORTEM_INTERVAL - Time elapsed between death and discovery, in hours (phv00570489.v1.p1)
- POSTMORTEM_TOXICOLOGY - Semicolon seperated list of positive postmortem toxicology tests conducted on cerebellum brain tissue (phv00570513.v1.p1)
- SAMPLE_ID - Sample ID (phv00570517.v1.p1)
- SAMPLE_ID - Sample ID (phv00570485.v1.p1)
- SOURCE_SUBJECT_ID - Subject ID used in the Source Repository (phv00570481.v1.p1)
- SOURCE_SUBJECT_ID2 - Subject ID mapping against dbGaP collection NIDA_HIVNeurogenomics_OpiateCocaine (phv00570483.v1.p1)
- SPINAL_CORD_PATHOLOGY - Free text for spinal cord pathology description coming from tissue source (phv00570496.v1.p1)
- SUBJECT_ID - Subject ID (phv00570486.v1.p1)
- SUBJECT_ID - Subject ID (phv00570477.v1.p1)
- SUBJECT_ID - Subject ID (phv00570484.v1.p1)
- SUBJECT_SOURCE - Source repository where subjects originate (phv00570480.v1.p1)
- SUBJECT_SOURCE2 - Subject mapping against dbGaP collection NIDA_HIVNeurogenomics_OpiateCocaine (phv00570482.v1.p1)
- TECHNIQUE - Technique used in assessing sample (phv00570521.v1.p1)
- TOX_HISTORY_AMP - Toxicology status within 2 years of death for Amphetamine (phv00570500.v1.p1)
- TOX_HISTORY_BAR - Toxicology status within 2 years of death for Barbiturate (phv00570501.v1.p1)
- TOX_HISTORY_BUP - Toxicology status within 2 years of death for Buprenorphine (phv00570503.v1.p1)
- TOX_HISTORY_BZO - Toxicology status within 2 years of death for Benzodiazepine (phv00570502.v1.p1)
- TOX_HISTORY_COC - Toxicology status within 2 years of death for Cocaine (phv00570505.v1.p1)
- TOX_HISTORY_COMMENTS - Free text field for comments about toxicology (phv00570512.v1.p1)
- TOX_HISTORY_MET - Toxicology status within 2 years of death for Methamphetamine (phv00570507.v1.p1)
- TOX_HISTORY_MTD - Toxicology status within 2 years of death for Methadone (phv00570506.v1.p1)
- TOX_HISTORY_OPI - Toxicology status within 2 years of death for Opioids (phv00570508.v1.p1)
- TOX_HISTORY_OXY - Toxicology status within 2 years of death for Oxycodone (phv00570509.v1.p1)
- TOX_HISTORY_PCP - Toxicology status within 2 years of death for Phencyclidine (phv00570510.v1.p1)
- TOX_HISTORY_TCA - Toxicology status within 2 years of death for Tricyclic Antidepressant (phv00570511.v1.p1)
- TOX_HISTORY_THC - Toxicology status within 2 years of death for Tetrahydrocannabinol (phv00570504.v1.p1)
- VIRAL_STATUS - Controlled vocabulary for viral status of the subject (phv00570492.v1.p1)
- YEARS_WITH_HIV - Years living with HIV (phv00570493.v1.p1)